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[187540_at]

Description ZK177.9 /REP_DB=WormBase Gene ID /WP=CE02098 /TR=SW:Q09375 /GB=AAG00047.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 1.6
(-3)
A 		15.3
(-1.8)
A 		7.4
(-2.5)
A 		68.6
(3)
A 		67
B 31.9
(1.3)
A 		24.7
(0.2)
A 		4.9
(-3)
A 		42.6
(3)
A 		38
C 26.3
(-1.2)
A 		32.2
(-0.5)
A 		10.6
(-3)
A 		63
(3)
A 		52
avr 19.9
(-1.5) 		24.1
(-1) 		7.6
(-3) 		58.1
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 67.2
(2)
A 		44
(-0)
A 		79.5
(3)
A 		43.8
(-0)
A 		52.5
(0.7)
A 		8.7
(-3)
A 		71
B 59.4
(3)
A 		35.8
(-0.3)
A 		34
(-0.5)
A 		15.9
(-3)
A 		30.5
(-1)
A 		19.2
(-2.5)
A 		44
C 75.4
(3)
A 		54.1
(1.3)
A 		1.7
(-3)
A 		2.3
(-3)
A 		12.3
(-2.1)
A 		18.9
(-1.6)
A 		74
avr 67.3
(3) 		44.6
(0.4) 		38.4
(-0.4) 		20.7
(-2.4) 		31.8
(-1.1) 		15.6
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.6
(-3)
A 		3.3
(-1.3)
A 		1.9
(-2.2)
A 		10
(3)
A 		9
B 10.2
(3)
A 		6.1
(0.3)
A 		1.1
(-3)
A 		9.1
(2.3)
A 		9
C 8.7
(1.3)
A 		9.3
(1.9)
A 		3.7
(-3)
A 		10.6
(3)
A 		7
avr 6.5
(0.4) 		6.2
(0.1) 		2.2
(-3) 		9.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 12.4
(1.1)
A 		15.7
(2.4)
A 		17.3
(3)
A 		11.1
(0.6)
A 		15.8
(2.4)
A 		2.1
(-3)
A 		15
B 20.7
(3)
A 		11.9
(-0.2)
A 		8.3
(-1.5)
A 		4.2
(-3)
A 		12.4
(-0)
A 		7.2
(-1.9)
A 		17
C 27.9
(3)
A 		16.5
(0.5)
A 		0.4
(-3)
A 		0.5
(-3)
A 		4
(-2.2)
A 		6.3
(-1.7)
A 		28
avr 20.3
(3) 		14.7
(0.8) 		8.7
(-1.6) 		5.3
(-3) 		10.7
(-0.8) 		5.2
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5027
Sequence Type Exemplar sequence
Representative Public ID ZK177.9 NCBI
Target Description ZK177.9 /REP_DB=WormBase Gene ID /WP=CE02098 /TR=SW:Q09375 /GB=AAG00047.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062656 NCBI Caenorhabditis elegans ZK177.9 (ZK177.9) mRNA, complete cds. 11/11 None
SNAP00000012887 ENSEMBL cdna:SNAP chromosome:CEL140:II:5517240:5517708:-1 11/11 None
GENEFINDER00000012900 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5517240:5517708:-1 11/11 None
ZK177.9 ENSEMBL cdna:known chromosome:CEL140:II:5517240:5517708:-1 gene:ZK177.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5517237-5517706(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK177.9
Entrez Gene 191238 Entrez gene
SwissProt Q09375 EMBL-EBI
WormBase CE02098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00047 Hypothetical protein ZK177.9 [Caenorhabditis elegans] ref|NP_495057.1| ZK177.9 [Caenorhabditis elegans] sp|Q09375|YS49_CAEEL Hypothetical protein ZK177.9 in chromosome II 3.0E-66
Sequence
Target Sequence 
>C. ELEGANS:187540_AT
tgaaagaaatcccggtccacgatcacttccgcgaaaccgtagcatatgacttctgtgctc
cgcatcacacctactattttgacaaaatttttaaccaatacaaaagtgcctatcaaaaac
cagaaaaagtcgacgagggagtacagaccacgcttcgaggtgatatcaaattggagccgt
tcgagaaagctgttgatagattcagaaagcagctgtctgtagctagaaaattacgtgagg
aaaatccagatgccgagtcagttgatgaagagaaggagagactcgagctgttccaatgtg
tcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAGAAATCCCGGTCCACGATCA 679 571 20 Antisense
TCACTTCCGCGAAACCGTAGCATAT 396 627 42 Antisense
GTAGCATATGACTTCTGTGCTCCGC 340 457 58 Antisense
TCCGCATCACACCTACTATTTTGAC 19 597 78 Antisense
CGACGAGGGAGTACAGACCACGCTT 584 251 150 Antisense
AGACCACGCTTCGAGGTGATATCAA 109 71 164 Antisense
GGAGCCGTTCGAGAAAGCTGTTGAT 528 521 192 Antisense
CAGAAAGCAGCTGTCTGTAGCTAGA 533 205 222 Antisense
GAAAATCCAGATGCCGAGTCAGTTG 331 351 259 Antisense
GAGAAGGAGAGACTCGAGCTGTTCC 658 391 289 Antisense
ACTCGAGCTGTTCCAATGTGTCAAA 363 99 300 Antisense
Sequence Source Affymetrix Proprietary Database