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[187538_at]

Description C09B8.1 /REP_DB=WormBase Gene ID /WP=CE02461 /TR=SW:Q17848 /GB=AAA68800.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 12      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 345
(3)
P 		146
(-3)
P 		251.9
(0.2)
P 		181.2
(-1.9)
P 		199
B 371
(3)
P 		245.3
(-0)
P 		281.3
(0.8)
P 		122
(-3)
P 		249
C 420.1
(3)
P 		257.3
(-1)
P 		206.3
(-2.3)
P 		178.7
(-3)
P 		241
avr 378.7
(3) 		216.2
(-1.5) 		246.5
(-0.6) 		160.6
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 314.8
(1.9)
P 		269.4
(0.5)
P 		351.9
(3)
P 		211
(-1.2)
P 		248.3
(-0.1)
P 		150.7
(-3)
P 		201
B 327.6
(1.4)
P 		298.2
(0.4)
P 		378
(3)
P 		282.3
(-0.1)
P 		240.7
(-1.4)
P 		190.7
(-3)
P 		187
C 381.5
(3)
P 		335.7
(1.7)
P 		196.7
(-2.1)
P 		275.2
(0)
P 		190.9
(-2.3)
P 		166
(-3)
P 		216
avr 341.3
(3) 		301.1
(1.6) 		308.9
(1.9) 		256.2
(0) 		226.6
(-1) 		169.1
(-3) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 125.6
(3)
P 		31.7
(-2.7)
P 		65.9
(-0.6)
P 		26.5
(-3)
P 		99
B 118.3
(3)
P 		60.6
(-0.8)
P 		65.2
(-0.5)
P 		26
(-3)
P 		92
C 139.1
(3)
P 		74
(-0.6)
P 		71.9
(-0.7)
P 		30.1
(-3)
P 		109
avr 127.7
(3) 		55.4
(-1.3) 		67.7
(-0.6) 		27.5
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 58
(-0.8)
P 		95.8
(3)
P 		76.6
(1.1)
P 		53.5
(-1.3)
P 		74.9
(0.9)
P 		36.7
(-3)
P 		59
B 114
(3)
P 		99.3
(0.9)
P 		91.8
(-0.1)
P 		74.8
(-2.5)
P 		97.8
(0.7)
P 		71.1
(-3)
P 		43
C 141.4
(3)
P 		102.4
(0.4)
P 		50.1
(-3)
P 		55.3
(-2.7)
P 		61.8
(-2.2)
P 		55.6
(-2.6)
P 		91
avr 104.5
(3) 		99.2
(2.4) 		72.8
(-0.8) 		61.2
(-2.2) 		78.2
(-0.2) 		54.5
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17001
Sequence Type Exemplar sequence
Representative Public ID C09B8.1 NCBI
Target Description C09B8.1 /REP_DB=WormBase Gene ID /WP=CE02461 /TR=SW:Q17848 /GB=AAA68800.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076607 NCBI Caenorhabditis elegans Inositol Polyphosphate 5-Phosphatase family member (ipp-5) (ipp-5) mRNA, complete cds. 11/11 None
GENEFINDER00000035916 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6031430:6033995:1 11/11 None
C09B8.1 ENSEMBL cdna:known chromosome:CEL140:X:6031427:6034450:1 gene:C09B8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035904 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6031429-6033248(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ipp-5
Ensembl C09B8.1
Entrez Gene 180871 Entrez gene
SwissProt Q17848 EMBL-EBI
WormBase CE30857 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583615_AT inositol polyphosphate-5-phosphatase, 40kDa cfa
CANINE_2:CFA.3798.1.A1_AT inositol polyphosphate-5-phosphatase, 40kDa cfa
CANINE_2:CFAAFFX.17369.1.S1_S_AT inositol polyphosphate-5-phosphatase, 40kDa cfa
CANINE_2:CFAAFFX.17374.1.S1_S_AT inositol polyphosphate-5-phosphatase, 40kDa cfa
DROSOPHILA_2:1638509_AT dm
DROSGENOME1:141649_AT dm
CHICKEN:GGA.5292.1.S1_AT similar to Inpp5a protein gga
HUGENEFL:Z31695_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HUGENEFL:X77567_S_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U133A:203006_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U133_PLUS_2:203006_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-FOCUS:203006_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U133A_2:203006_AT inositol polyphosphate-5-phosphatase, 40kDa hs
U133_X3P:G5031796_3P_AT inositol polyphosphate-5-phosphatase, 40kDa hs
U133_X3P:HS2.124029.2.S1_3P_S_AT inositol polyphosphate-5-phosphatase, 40kDa hs
U133_X3P:HS2.124029.2.S1_3P_AT inositol polyphosphate-5-phosphatase, 40kDa hs
U133_X3P:1554757_3P_A_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U133_PLUS_2:1554757_A_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U95AV2:41285_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U95E:91701_AT inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U133_PLUS_2:1561733_AT Inositol polyphosphate-5-phosphatase, 40kDa hs
HG-U95AV2:41284_AT Inositol polyphosphate-5-phosphatase, 40kDa hs
HU35KSUBA:AA206902_AT Inositol polyphosphate-5-phosphatase, 40kDa hs
MG-U74AV2:97859_AT inositol polyphosphate-5-phosphatase A mm
MG-U74AV2:97858_AT inositol polyphosphate-5-phosphatase A mm
MOE430A:1433605_AT inositol polyphosphate-5-phosphatase A mm
MOUSE430A_2:1433605_AT inositol polyphosphate-5-phosphatase A mm
MOUSE430_2:1433605_AT inositol polyphosphate-5-phosphatase A mm
MG-U74BV2:106905_AT inositol polyphosphate-5-phosphatase A mm
MOE430B:1446114_AT Inositol polyphosphate-5-phosphatase A (Inpp5a), mRNA mm
MOUSE430_2:1446114_AT Inositol polyphosphate-5-phosphatase A (Inpp5a), mRNA mm
MU19KSUBA:TC15645_S_AT Inositol polyphosphate-5-phosphatase A (Inpp5a), mRNA mm
MU19KSUBB:TC31587_AT Inositol polyphosphate-5-phosphatase A (Inpp5a), mRNA mm
RG-U34B:RC_AA850544_AT inositol polyphosphate-5-phosphatase A (predicted) rn
RG-U34B:RC_AA963131_F_AT inositol polyphosphate-5-phosphatase A (predicted) rn
RG-U34B:RC_AA963131_I_AT inositol polyphosphate-5-phosphatase A (predicted) rn
RAE230A:1388697_AT inositol polyphosphate-5-phosphatase A (predicted) rn
RAT230_2:1388697_AT inositol polyphosphate-5-phosphatase A (predicted) rn
RAT230_2:1390774_AT Inositol polyphosphate-5-phosphatase A (predicted) rn
RAE230B:1390774_AT Inositol polyphosphate-5-phosphatase A (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
46856 phosphoinositide dephosphorylation inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4437 inositol or phosphatidylinositol phosphatase activity inferred from electronic annotation QuickGO AmiGO
4445 inositol-polyphosphate 5-phosphatase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68800 Inositol polyphosphate 5-phosphatase protein 5 [Caenorhabditis elegans] ref|NP_509008.2| Inositol Polyphosphate 5-Phosphatase family member (ipp-5) [Caenorhabditis elegans] sp|Q17848|I5P1_CAEEL Probable type I inositol-1,4,5-trisphosphate 5-phosphatase (5PTase) 0.0
blast AAL72637 inositol polyphosphate 5-phosphatase type I [Caenorhabditis elegans] 0.0
blast CAE68854 Hypothetical protein CBG14816 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.2E-14
Sequence
Target Sequence 
>C. ELEGANS:187538_AT
gagaacccacaactatacagccaaaaccggaaacgagcacttgactttgtgctcgccgag
ctttcgtcaaaggaaaacgggtgcacgcctctgctctttgtttttggtgatctcaatttt
aggctggactctcgttctttcttaaacgtaatggtcgccgaccaagagcagatgggctcc
ctggccgatggtcttcaggcttcggctgcaaatcttcaagtaatcacccacccatccgaa
aatttgaggaggacagtttcggctattgagttccgcagagaatcggatagcgatgatagt
caaaacagttgtgttctacggatcgaaaaaaagaaatttgactatttcaatcacaaaaaa
ctactggacgactggcgatcgtacagagatgacgacaaagaaaccgaaaactttcagagc
atgtttgagatgcatataaatttccctccaacatacccgtggagtgaagatccagaaaat
tccgaaactctgatgaagactagggcacccgcatggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACCCACAACTATACAGCCAAA 165 393 574 Antisense
ACTTTGTGCTCGCCGAGCTTTCGTC 278 103 617 Antisense
CCTCTGCTCTTTGTTTTTGGTGATC 558 267 661 Antisense
CAATTTTAGGCTGGACTCTCGTTCT 155 181 687 Antisense
CCAAGAGCAGATGGGCTCCCTGGCC 118 277 735 Antisense
GGCCGATGGTCTTCAGGCTTCGGCT 179 543 756 Antisense
AGGCTTCGGCTGCAAATCTTCAAGT 150 51 770 Antisense
TCACCCACCCATCCGAAAATTTGAG 316 627 797 Antisense
GAGGACAGTTTCGGCTATTGAGTTC 187 405 822 Antisense
GATGCATATAAATTTCCCTCCAACA 551 411 1002 Antisense
TGAAGACTAGGGCACCCGCATGGTG 390 573 1067 Antisense
Sequence Source Affymetrix Proprietary Database