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[187536_at]

Description C43G2.4 /REP_DB=WormBase Gene ID /WP=CE08693 /TR=SW:Q94175 /GB=AAB09111.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 01      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 436.3
(3)
P 		190.9
(-1.8)
P 		132.3
(-3)
P 		155.7
(-2.5)
P 		304
B 449.5
(3)
P 		193.9
(-1.5)
P 		108
(-3)
P 		120.7
(-2.8)
P 		342
C 420.4
(3)
P 		177.2
(-2.1)
P 		135.9
(-3)
P 		163.8
(-2.4)
P 		285
avr 435.4
(3) 		187.3
(-1.8) 		125.4
(-3) 		146.7
(-2.6) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 391.8
(3)
P 		264.5
(0.6)
P 		266.2
(0.7)
P 		227.2
(-0.1)
P 		130.3
(-1.9)
P 		68.7
(-3)
P 		323
B 376.1
(3)
P 		234.3
(-0.2)
P 		171.1
(-1.6)
P 		206.8
(-0.8)
P 		167
(-1.7)
P 		111.3
(-3)
P 		265
C 316.6
(2.3)
P 		341.3
(3)
P 		261.4
(0.7)
P 		276.1
(1.2)
P 		135.6
(-2.8)
P 		128.6
(-3)
P 		213
avr 361.5
(3) 		280
(1.1) 		232.9
(0) 		236.7
(0.1) 		144.3
(-2) 		102.9
(-3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 158.9
(3)
P 		41.4
(-2.2)
P 		34.6
(-2.5)
P 		22.8
(-3)
P 		136
B 143.3
(3)
P 		47.9
(-1.8)
P 		25
(-3)
P 		25.7
(-3)
P 		118
C 139.2
(3)
P 		50.9
(-1.7)
P 		47.4
(-1.9)
P 		27.6
(-3)
P 		112
avr 147.1
(3) 		46.7
(-1.9) 		35.7
(-2.5) 		25.4
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 72.2
(1.3)
P 		94.1
(3)
P 		58
(0.2)
P 		57.6
(0.2)
P 		39.3
(-1.2)
P 		16.7
(-3)
P 		77
B 130.9
(3)
P 		78
(-0.6)
P 		41.5
(-3)
P 		54.8
(-2.1)
P 		67.8
(-1.2)
P 		41.5
(-3)
P 		89
C 117.3
(3)
P 		104.1
(1.9)
P 		66.5
(-1.1)
P 		55.5
(-2)
P 		43.9
(-2.9)
P 		43
(-3)
P 		74
avr 106.8
(3) 		92.1
(1.8) 		55.3
(-1.2) 		56
(-1.2) 		50.3
(-1.6) 		33.7
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11226
Sequence Type Exemplar sequence
Representative Public ID C43G2.4 NCBI
Target Description C43G2.4 /REP_DB=WormBase Gene ID /WP=CE08693 /TR=SW:Q94175 /GB=AAB09111.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068599 NCBI Caenorhabditis elegans C43G2.4 (C43G2.4) mRNA, complete cds. 11/11 None
SNAP00000004603 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6562682:6565123:1 11/11 None
GENEFINDER00000004611 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6562682:6565123:1 11/11 None
C43G2.4 ENSEMBL cdna:known chromosome:CEL140:IV:6560720:6565245:1 gene:C43G2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6562687-6565129(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43G2.4
Entrez Gene 183419 Entrez gene
SwissProt Q94175 EMBL-EBI
WormBase CE34750 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09111 Hypothetical protein C43G2.4 [Caenorhabditis elegans] ref|NP_501000.2| C43G2.4 [Caenorhabditis elegans] sp|Q94175|YCEL_CAEEL Hypothetical protein C43G2.4 in chromosome IV 0.0
blast CAE61514 Hypothetical protein CBG05414 [Caenorhabditis briggsae] 0.0
blast CAE59969 Hypothetical protein CBG03460 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501000.2 4 24-46,74-93,229-251,261-283
C43G2.4 4 24-46,74-93,229-251,261-283
SNAP00000004603 4 24-46,74-93,229-251,261-283
GENEFINDER00000004611 4 24-46,74-93,250-272,282-304
Sequence
Target Sequence 
>C. ELEGANS:187536_AT
gattgggtctgtgttccattggtttatactcaggtagccgctcttgccacatattcctat
ttcttcttctgcttattcggtcgtcaagatctgaatcatgatgatttctattctcttgat
gctttcttcccacttttcacagttgttcagtttcttttctttgttggatggtttaaagtc
ggtcaagatttgatgcgtccatttggattagatgacgacgattttgaattatcttacata
ttggatagaaatatagtcacatcattcacaattgttgattcacttcaagatgatgatcca
ccaaaattcgaagaagacgtgttctggaaacatcacaacgagcaacaacaaatgcatcaa
agtatgttccttccaagagttccgacttctttaaaatggggacgaattgatttgagtcga
aatgctcataagcatccacctaaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGGTCTGTGTTCCATTGGTTT 372 435 751 Antisense
TTGGTTTATACTCAGGTAGCCGCTC 563 695 769 Antisense
TTCTTCTGCTTATTCGGTCGTCAAG 517 689 814 Antisense
ACAGTTGTTCAGTTTCTTTTCTTTG 18 107 889 Antisense
GGTCAAGATTTGATGCGTCCATTTG 665 503 931 Antisense
AATATAGTCACATCATTCACAATTG 368 173 1000 Antisense
GATTCACTTCAAGATGATGATCCAC 431 431 1027 Antisense
GGAAACATCACAACGAGCAACAACA 577 527 1076 Antisense
AATGCATCAAAGTATGTTCCTTCCA 509 165 1101 Antisense
TATGTTCCTTCCAAGAGTTCCGACT 151 657 1113 Antisense
TGCTCATAAGCATCCACCTAAATTG 92 579 1173 Antisense
Sequence Source Affymetrix Proprietary Database