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[187535_s_at] helicase

Description K02F3.1 /REP_DB=WormBase Gene ID /WP=CE23846 /GB=AAK21425.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=helicase
Cluster 6grp_high1_10_10 > 59      6grp_total > 01      4grp_total > 37      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 136
(2.5)
P 		147.1
(3)
A 		18.3
(-3)
A 		116.6
(1.6)
P 		129
B 211.7
(3)
P 		112.3
(-1.6)
A 		97.9
(-2.2)
A 		81.4
(-3)
A 		130
C 163.8
(3)
P 		141.6
(0.8)
A 		104.3
(-3)
M 		144.5
(1.1)
M 		60
avr 170.5
(3) 		133.7
(0.7) 		73.5
(-3) 		114.2
(-0.5) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 121.5
(1.4)
A 		124.2
(1.9)
P 		131.4
(3)
P 		97.5
(-2.4)
P 		128.7
(2.6)
P 		93.5
(-3)
P 		38
B 110.5
(0.4)
P 		124.3
(2.1)
P 		81.9
(-3)
P 		114.9
(1)
P 		115.4
(1)
P 		131.9
(3)
P 		50
C 136.4
(1.2)
P 		154
(2.6)
P 		144
(1.8)
A 		83.3
(-3)
P 		116.7
(-0.4)
P 		159.3
(3)
P 		76
avr 122.8
(1.1) 		134.2
(3) 		119.1
(0.5) 		98.6
(-3) 		120.3
(0.7) 		128.2
(2) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 49.5
(3)
P 		31.9
(0.6)
A 		4.8
(-3)
A 		17.1
(-1.3)
P 		45
B 67.5
(3)
P 		27.7
(-1.8)
A 		22.7
(-2.4)
A 		17.3
(-3)
A 		50
C 54.2
(3)
P 		40.7
(0.3)
A 		36.4
(-0.6)
M 		24.4
(-3)
M 		30
avr 57.1
(3) 		33.4
(-0.8) 		21.3
(-2.7) 		19.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 22.4
(-3)
A 		44.2
(3)
P 		28.6
(-1.3)
P 		24.7
(-2.4)
P 		38.8
(1.5)
P 		22.8
(-2.9)
P 		22
B 38.5
(0.8)
P 		41.4
(1.4)
P 		19.9
(-3)
P 		30.4
(-0.8)
P 		46.9
(2.5)
P 		49.2
(3)
P 		29
C 50.5
(2.5)
P 		47
(2)
P 		36.7
(0.3)
A 		16.7
(-3)
P 		37.8
(0.5)
P 		53.3
(3)
P 		37
avr 37.1
(0.9) 		44.2
(3) 		28.4
(-1.7) 		23.9
(-3) 		41.2
(2.1) 		41.8
(2.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187535_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8219
Sequence Type Exemplar sequence
Representative Public ID K02F3.1 NCBI
Target Description K02F3.1 /REP_DB=WormBase Gene ID /WP=CE23846 /GB=AAK21425.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=helicase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064876 NCBI Caenorhabditis elegans K02F3.1 (helicase) mRNA, complete cds. 11/11 None
SNAP00000008343 ENSEMBL cdna:SNAP chromosome:CEL140:III:854227:856420:1 11/11 None
K02F3.1 ENSEMBL cdna:known chromosome:CEL140:III:854227:856491:1 gene:K02F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:854226-856420(+) 100.0 100.0
Public Domain and Genome References
Gene Title helicase
Ensembl K02F3.1
Entrez Gene 175245 Entrez gene
SwissProt P46064 EMBL-EBI
WormBase CE31028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21425 Hypothetical protein K02F3.1 [Caenorhabditis elegans] ref|NP_497277.2| K02F3.1 [Caenorhabditis elegans] 0.0
blast T16536 hypothetical protein K02F3.1 - Caenorhabditis elegans 0.0
blast P46064 Putative ATP-dependent DNA helicase Q1 0.0
Sequence
Target Sequence 
>C. ELEGANS:187535_S_AT
caaggattcttggtgactgctcagcgattagaagaggaatccaagtcagatgatattgga
gctggatgtgtgacagctgtggaacttgcgtgtaaaattcgcaaccaaagtaaaaccatc
atggatacaataacccgtcacccatctctcggcccccgtatgatgcaattagccgaacga
tgtggcgttggatacgaaaatgaagagattattcatcaaatctgcgatcggttctccttg
catcctagtgagcccacgtggttagactatgtggagaacctagttcaaacggtcggaaga
tttggatcagtgaaagagaccatgcagaaatctctaaaaatcatgttcgaattcctggat
tttgactctaaccgattcaatgaacgagcatggagtctctttgagaaagttctgagccta
actgatccctcgtttgtggtgcctgaatggagaacaagattcgactggtggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGATTCTTGGTGACTGCTCAGC 59 185 961 Antisense
GTGACAGCTGTGGAACTTGCGTGTA 684 481 1030 Antisense
TCATGGATACAATAACCCGTCACCC 140 619 1079 Antisense
GCCCCCGTATGATGCAATTAGCCGA 170 287 1112 Antisense
CATCAAATCTGCGATCGGTTCTCCT 256 213 1174 Antisense
CATCCTAGTGAGCCCACGTGGTTAG 420 211 1201 Antisense
ATTCCTGGATTTTGACTCTAACCGA 310 7 1311 Antisense
GAACGAGCATGGAGTCTCTTTGAGA 359 347 1342 Antisense
AAAGTTCTGAGCCTAACTGATCCCT 205 123 1366 Antisense
CCCTCGTTTGTGGTGCCTGAATGGA 697 259 1387 Antisense
GAGAACAAGATTCGACTGGTGGCCG 137 393 1410 Antisense
Sequence Source Affymetrix Proprietary Database