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[187534_s_at]

Description Y37E11B.10 /REP_DB=WormBase Gene ID /WP=CE28114 /TR=Q9TYM8 /GB=AAD12819.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 56      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 11.5
(-3)
A 		14.7
(-2.7)
A 		72.2
(3)
A 		12.4
(-2.9)
A 		61
B 9.4
(-3)
A 		18.3
(3)
A 		16.7
(1.9)
A 		12.4
(-1)
A 		9
C 11.5
(-3)
A 		22
(-1.2)
A 		46
(3)
A 		14.9
(-2.4)
A 		35
avr 10.8
(-3) 		18.3
(-1.7) 		45
(3) 		13.2
(-2.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 13.1
(-2.9)
A 		32.1
(-2.3)
A 		10.5
(-3)
A 		105.5
(-0.1)
A 		168.2
(1.8)
M 		208.2
(3)
P 		198
B 75.4
(-0.2)
A 		13.3
(-2.9)
A 		58.2
(-0.9)
A 		10.8
(-3)
A 		115.2
(1.5)
A 		148.9
(3)
P 		138
C 10
(-3)
A 		71.8
(-1)
A 		15.3
(-2.8)
A 		20
(-2.7)
A 		192
(3)
P 		131.2
(1)
P 		182
avr 32.8
(-2.8) 		39.1
(-2.5) 		28
(-3) 		45.4
(-2.2) 		158.5
(2.8) 		162.8
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.2
(-2.2)
A 		3.2
(-2.5)
A 		18.9
(3)
A 		1.8
(-3)
A 		17
B 3
(-1.7)
A 		4.5
(3)
A 		3.9
(1.1)
A 		2.6
(-3)
A 		2
C 3.8
(-2.4)
A 		6.3
(-1.3)
A 		16
(3)
A 		2.5
(-3)
A 		14
avr 3.7
(-2.2) 		4.7
(-1.6) 		12.9
(3) 		2.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 2.4
(-3)
A 		11.4
(-1.9)
A 		2.3
(-3)
A 		26.8
(0)
A 		50.8
(3)
M 		50.7
(3)
P 		49
B 26.3
(-0.3)
A 		4.4
(-2.8)
A 		14.1
(-1.7)
A 		2.8
(-3)
A 		46.8
(2)
A 		55.5
(3)
P 		53
C 3.7
(-3)
A 		21.9
(-1.1)
A 		3.9
(-3)
A 		4
(-3)
A 		62.1
(3)
P 		43.9
(1.1)
P 		58
avr 10.8
(-2.5) 		12.6
(-2.3) 		6.8
(-3) 		11.2
(-2.4) 		53.2
(3) 		50
(2.6) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10418
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.10 NCBI
Target Description Y37E11B.10 /REP_DB=WormBase Gene ID /WP=CE28114 /TR=Q9TYM8 /GB=AAD12819.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028271(11), NM_001028272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028271 NCBI Caenorhabditis elegans Y37E11B.10a (Y37E11B.10) mRNA, complete cds. 11/11 None
NM_001028272 NCBI Caenorhabditis elegans Y37E11B.10b (Y37E11B.10) mRNA, complete cds. 11/11 None
SNAP00000026349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3603575:3613066:-1 11/11 None
GENEFINDER00000026354 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3603575:3605637:-1 11/11 None
Y37E11B.10a ENSEMBL cdna:known chromosome:CEL140:IV:3603544:3605637:-1 gene:Y37E11B.10 11/11 A 
Y37E11B.10b ENSEMBL cdna:known chromosome:CEL140:IV:3603575:3606461:-1 gene:Y37E11B.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177122 3 2 NM_001028271 187534_s_at (11)
NM_001028272 187534_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3603580-3605643(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37E11B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12819 Hypothetical protein Y37E11B.10a [Caenorhabditis elegans] ref|NP_001023442.1| Y37E11B.10a [Caenorhabditis elegans] 0.0
blast AAP13763 Hypothetical protein Y37E11B.10b [Caenorhabditis elegans] ref|NP_001023443.1| Y37E11B.10b [Caenorhabditis elegans] 0.0
blast NP_500385 ZC416.6 [Caenorhabditis elegans] gb|AAB88369.2| Hypothetical protein ZC416.6 [Caenorhabditis elegans] 0.0
blast CAE63765 Hypothetical protein CBG08301 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.7E-109
Sequence
Target Sequence 
>C. ELEGANS:187534_S_AT
gatagtgtatacttcccaggtgtcaataacccttctactgccaagttcggaaaatcagct
agctgtaagcctggtcaagcctcgacctacaatttcccgggtgccggaaaatgcgcccgt
cgtatggatgaggtggctccaccgactccaaaattgaatgcaggcgacgcaagccactgt
gtctacaatgttgctcaacttccaccggctcagcgacgcatgccacctccgattgctact
ggagctccaaagtcgcttttcgggactcgtaaggccaagacagctccgaatccggttcca
gctcctcatgtcatgagcaacactgttgctccgactgctccaaatgcttcaaccagaaac
aagatcgtcgtctttggcaccacgcctgatggaaagtcaacgatccaaatgacaatcgac
atgaaggtggtggccggggaaatgctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAGTGTATACTTCCCAGGTGTCA 250 425 1087 Antisense
GCTAGCTGTAAGCCTGGTCAAGCCT 42 301 1144 Antisense
GGTCAAGCCTCGACCTACAATTTCC 284 503 1159 Antisense
AATGCGCCCGTCGTATGGATGAGGT 215 167 1196 Antisense
TGGATGAGGTGGCTCCACCGACTCC 624 549 1211 Antisense
GAATGCAGGCGACGCAAGCCACTGT 548 331 1242 Antisense
GCCACTGTGTCTACAATGTTGCTCA 508 279 1259 Antisense
CCACCTCCGATTGCTACTGGAGCTC 319 273 1309 Antisense
GCTCCAAAGTCGCTTTTCGGGACTC 591 293 1330 Antisense
GTAAGGCCAAGACAGCTCCGAATCC 191 463 1355 Antisense
GGTGGTGGCCGGGGAAATGCTCAAA 372 499 1512 Antisense
Sequence Source Affymetrix Proprietary Database