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[187533_at]

Description Y55F3AM.14 /REP_DB=WormBase Gene ID /WP=CE22541 /TR=Q9N360 /GB=AAF60789.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 49.3
(-1)
A 		78.9
(3)
A 		34.6
(-3)
A 		56.6
(-0)
A 		44
B 24.8
(-0.8)
A 		34.5
(0.9)
A 		47.2
(3)
A 		11.6
(-3)
A 		36
C 53.1
(-1.3)
A 		73
(1.4)
M 		40.4
(-3)
A 		84.4
(3)
A 		44
avr 42.4
(-2.5) 		62.1
(3) 		40.7
(-3) 		50.9
(-0.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 83.1
(3)
A 		7.2
(-3)
A 		39.2
(-0.5)
M 		43.2
(-0.2)
A 		47.9
(0.2)
A 		41.5
(-0.3)
A 		76
B 18.8
(-3)
A 		59.4
(3)
A 		31.3
(-1.2)
A 		53.7
(2.2)
A 		47.2
(1.2)
A 		37.2
(-0.3)
A 		41
C 38.8
(-0.7)
A 		50
(0.1)
P 		35.2
(-1)
A 		88.8
(3)
A 		8.2
(-3)
A 		55.9
(0.6)
P 		81
avr 46.9
(-0.3) 		38.9
(-2) 		35.2
(-2.8) 		61.9
(3) 		34.4
(-3) 		44.9
(-0.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.9
(3)
A 		17.1
(2.5)
A 		9.1
(-2.5)
A 		8.3
(-3)
A 		10
B 7.9
(0.9)
A 		8.5
(1.3)
A 		10.9
(3)
A 		2.5
(-3)
A 		8
C 17.6
(0)
A 		21
(3)
M 		14.1
(-3)
A 		14.2
(-2.9)
A 		7
avr 14.5
(2.2) 		15.5
(3) 		11.4
(-0.4) 		8.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 15.3
(3)
A 		2.6
(-3)
A 		8.5
(-0.2)
M 		11
(1)
A 		14.4
(2.6)
A 		10.1
(0.5)
A 		13
B 6.5
(-3)
A 		19.8
(3)
A 		7.6
(-2.5)
A 		14.2
(0.5)
A 		19.2
(2.7)
A 		13.9
(0.3)
A 		13
C 14.4
(1.4)
A 		15.3
(1.7)
P 		9
(-0.6)
A 		17.9
(2.7)
A 		2.7
(-3)
A 		18.7
(3)
P 		16
avr 12.1
(0.7) 		12.6
(1.2) 		8.4
(-3) 		14.4
(3) 		12.1
(0.7) 		14.2
(2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10745
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.14 NCBI
Target Description Y55F3AM.14 /REP_DB=WormBase Gene ID /WP=CE22541 /TR=Q9N360 /GB=AAF60789.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067632 NCBI Caenorhabditis elegans Y55F3AM.14 (Y55F3AM.14) mRNA, complete cds. 11/11 None
SNAP00000030060 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1058845:1063178:-1 11/11 None
GENEFINDER00000030076 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1058845:1063178:-1 11/11 None
Y55F3AM.14 ENSEMBL cdna:known chromosome:CEL140:IV:1058845:1063178:-1 gene:Y55F3AM.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1058850-1063184(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AM.14
Entrez Gene 190310 Entrez gene
SwissProt Q9N360 EMBL-EBI
WormBase CE22541 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60789 Hypothetical protein Y55F3AM.14 [Caenorhabditis elegans] ref|NP_500033.1| Y55F3AM.14 [Caenorhabditis elegans] 0.0
blast CAE74723 Hypothetical protein CBG22539 [Caenorhabditis briggsae] 1.0E-166
blast XP_140546 PREDICTED: similar to CDNA sequence BC018101 [Mus musculus] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.9E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.6E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:187533_AT
actccgactcggaatctgacactgaaatgaaaatatgcccattacctaatcccccactga
cactggcgcccacgcatcaacaaatcccacctcctgtcaatatttatgctcaacaaccac
cacctaatccacttggcagcatccttggcaacacgtcactgacacctcagactctgaatt
ttgggctcccgtcactgtcgtcggcgtcgttctcctcgctgaacgcccacgcgccgttca
cgcctgttgagctcccgaactcagcggatttcggcccacttacggcctccaagccacacg
ccgtacccttccatccctcagaaatgtgtctgtcggcattccgaaaagttccagagtctt
cgtcaatttccggactgggatccctgtccacaagtattctctcaactcaactattacttc
aacttcaacatactcccgactttaactacctcctcaatcagaacttgttatcctcattgg
ccggtctcagtggcctttcagcaactctcggacctcagctacaggccaccacgcccactt
cggctaatcagcaaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCCGACTCGGAATCTGACACTGA 407 99 1403 Antisense
TCCCACCTCCTGTCAATATTTATGC 279 599 1487 Antisense
TCAGACTCTGAATTTTGGGCTCCCG 540 621 1569 Antisense
CCTTCCATCCCTCAGAAATGTGTCT 499 269 1709 Antisense
GTTCCAGAGTCTTCGTCAATTTCCG 250 441 1750 Antisense
TCAATTTCCGGACTGGGATCCCTGT 366 633 1765 Antisense
ATTCTCTCAACTCAACTATTACTTC 505 9 1798 Antisense
TCAACATACTCCCGACTTTAACTAC 243 629 1827 Antisense
TTAACTACCTCCTCAATCAGAACTT 259 681 1844 Antisense
CAGAACTTGTTATCCTCATTGGCCG 506 205 1861 Antisense
CCCACTTCGGCTAATCAGCAACCGT 48 259 1936 Antisense
Sequence Source Affymetrix Proprietary Database