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[187532_s_at]

Description F39B2.11 /REP_DB=WormBase Gene ID /WP=CE16016 /TR=SW:O45503 /GB=CAB07391.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 73      6grp_total > 67      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 590.8
(1.7)
P 		651.2
(3)
P 		627.9
(2.5)
P 		380.7
(-3)
P 		271
B 615.5
(1.1)
P 		707.1
(2.7)
P 		723.2
(3)
P 		382.5
(-3)
P 		341
C 673.1
(3)
P 		552.6
(0.4)
P 		654.4
(2.6)
P 		393.7
(-3)
P 		279
avr 626.5
(2.1) 		637
(2.3) 		668.5
(3) 		385.6
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 455.5
(-2.2)
P 		559.7
(-0)
P 		505.2
(-1.1)
P 		414.6
(-3)
P 		497.7
(-1.3)
P 		706.3
(3)
P 		292
B 378.5
(-3)
P 		455.1
(-1)
P 		474.2
(-0.5)
P 		429.1
(-1.7)
P 		440
(-1.4)
P 		608.9
(3)
P 		230
C 680.3
(2.4)
P 		470
(-3)
P 		588.5
(0.1)
P 		570
(-0.4)
P 		635.2
(1.3)
P 		702.8
(3)
P 		233
avr 504.8
(-2) 		494.9
(-2.3) 		522.6
(-1.5) 		471.2
(-3) 		524.3
(-1.4) 		672.7
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 215.1
(3)
P 		141.4
(0.2)
P 		164.1
(1.1)
P 		55.7
(-3)
P 		159
B 196.3
(3)
P 		174.6
(1.9)
P 		167.6
(1.5)
P 		81.5
(-3)
P 		115
C 222.8
(2.8)
P 		158.9
(0.4)
P 		228.1
(3)
P 		66.4
(-3)
P 		162
avr 211.4
(3) 		158.3
(0.8) 		186.6
(2) 		67.9
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 84
(-3)
P 		199.1
(3)
P 		110
(-1.6)
P 		105.2
(-1.9)
P 		150.2
(0.5)
P 		172
(1.6)
P 		115
B 131.7
(-2)
P 		151.5
(-1)
P 		115.1
(-2.9)
P 		113.7
(-3)
P 		178.8
(0.4)
P 		227
(3)
P 		113
C 252.2
(3)
P 		143.4
(-1.7)
P 		149.8
(-1.5)
P 		114.6
(-3)
P 		205.5
(1)
P 		235.3
(2.3)
P 		138
avr 156
(-0.3) 		164.7
(0.2) 		125
(-2.2) 		111.2
(-3) 		178.2
(1) 		211.4
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187532_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.841
Sequence Type Exemplar sequence
Representative Public ID F39B2.11 NCBI
Target Description F39B2.11 /REP_DB=WormBase Gene ID /WP=CE16016 /TR=SW:O45503 /GB=CAB07391.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061168 NCBI Caenorhabditis elegans F39B2.11 (F39B2.11) mRNA, complete cds. 11/11 None
SNAP00000018497 ENSEMBL cdna:SNAP chromosome:CEL140:I:14763459:14764494:-1 11/11 None
GENEFINDER00000018517 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14763459:14764494:-1 11/11 None
F39B2.11 ENSEMBL cdna:known chromosome:CEL140:I:14763288:14764544:-1 gene:F39B2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14763389-14764425(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39B2.11
Entrez Gene 173340 Entrez gene
SwissProt O45503 EMBL-EBI
WormBase CE16016 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583217_AT similar to metaxin 1 isoform 1 cfa
CANINE_2:CFA.3382.1.A1_AT similar to metaxin 1 isoform 1 cfa
CANINE_2:CFA.3382.1.A1_S_AT similar to metaxin 1 isoform 1 cfa
DROSOPHILA_2:1633940_AT dm
DROSGENOME1:154154_AT dm
HG-U133_PLUS_2:210386_S_AT metaxin 1 hs
HG-FOCUS:210386_S_AT metaxin 1 hs
HG-U133A:210386_S_AT metaxin 1 hs
HG-U133A_2:210386_S_AT metaxin 1 hs
HG-U95AV2:40890_AT metaxin 1 hs
U133_X3P:G12804906_3P_A_AT metaxin 1 hs
HG-U95AV2:40625_F_AT Metaxin 1 hs
MOE430A:1418522_AT metaxin 1 mm
MOUSE430A_2:1418522_AT metaxin 1 mm
MOUSE430_2:1418522_AT metaxin 1 mm
MU11KSUBA:L36962_S_AT metaxin 1 mm
MG-U74AV2:94277_AT metaxin 1 mm
MG-U74AV2:161898_I_AT metaxin 1 mm
MOE430A:1418521_A_AT metaxin 1 mm
MOUSE430A_2:1418521_A_AT metaxin 1 mm
MOUSE430_2:1418521_A_AT metaxin 1 mm
MOUSE430_2:1447361_AT Metaxin 1, mRNA (cDNA clone MGC:35996 IMAGE:5355724) mm
MOE430B:1447361_AT Metaxin 1, mRNA (cDNA clone MGC:35996 IMAGE:5355724) mm
MG-U74BV2:105856_AT Metaxin 1, mRNA (cDNA clone MGC:35996 IMAGE:5355724) mm
MG-U74CV2:166706_AT Metaxin 1, mRNA (cDNA clone MGC:35996 IMAGE:5355724) mm
Protein Similarities
Method ID Description E-Value
blast CAB07391 Hypothetical protein F39B2.11 [Caenorhabditis elegans] ref|NP_493569.1| F39B2.11 [Caenorhabditis elegans] sp|O45503|MTX1_CAEEL Metaxin 1 homolog 1.0E-156
blast CAE72579 Hypothetical protein CBG19767 [Caenorhabditis briggsae] 1.0E-147
blast AAH85411 Metaxin 1 [Danio rerio] ref|NP_001007281.1| metaxin 1 [Danio rerio] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:187532_S_AT
gatgcacacattttggacggacgagctcaattacaatacagtgacgcaatattggtacgc
atctcatctgcatttcccctacaatctgtattacctcgaaaagcgacgaaagaaggcatt
gcgattgttggctggaaagaatgacactgaaattttgaaagaagcattcatggcgttgaa
tactctatccacaaagcttggcgataataaatttttctgtggaaataagccgacgtcact
ggatgccctggtattcggctaccttgctccactgctccgagttccactgccaaatgatcg
tcttcaagtccagctctcagcatgtccgaatttagtgagattcgtggaaactgtgtcatc
aatctacctgccacttggcgaagatgagctcaaaagacaacaagcgaatcggaaaatgtg
gcaatctcggatctcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCACACATTTTGGACGGACGAG 8 413 336 Antisense
ATTGGTACGCATCTCATCTGCATTT 161 5 386 Antisense
GCATTTCCCCTACAATCTGTATTAC 204 307 405 Antisense
GAAGGCATTGCGATTGTTGGCTGGA 494 333 447 Antisense
ATGGCGTTGAATACTCTATCCACAA 403 53 505 Antisense
GTCACTGGATGCCCTGGTATTCGGC 528 465 570 Antisense
GAGTTCCACTGCCAAATGATCGTCT 607 397 614 Antisense
AAATGATCGTCTTCAAGTCCAGCTC 27 121 627 Antisense
AGCTCTCAGCATGTCCGAATTTAGT 428 79 647 Antisense
AAACTGTGTCATCAATCTACCTGCC 477 127 683 Antisense
AAATGTGGCAATCTCGGATCTCGAA 115 121 749 Antisense
Sequence Source Affymetrix Proprietary Database