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[187531_at]

Description Y110A2AL.4 /REP_DB=WormBase Gene ID /WP=CE25192 /TR=Q9N4A4 /GB=AAF60404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      6grp_highest_nonorm > 60      6grp_total > 28      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2669
1 2 3 4 range
A 566.8
(-1.7)
P 		18
(-3)
A 		7.3
(-3)
A 		2676.6
(3)
P 		2669
B 514.9
(-1.9)
P 		94.8
(-2.9)
P 		35.8
(-3)
A 		2633.5
(3)
P 		2598
C 522.4
(-1.9)
P 		18
(-3)
A 		42.6
(-2.9)
A 		2650.9
(3)
P 		2633
avr 534.7
(-1.8) 		43.6
(-3) 		28.6
(-3) 		2653.7
(3) 		2625

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 835
1 2 3 4 5 6 range
A 685.2
(3)
P 		201.2
(-2.3)
P 		141.5
(-3)
P 		219.2
(-2.1)
P 		347.8
(-0.7)
P 		411.1
(-0)
P 		544
B 757.1
(3)
P 		260
(-1.8)
P 		137.4
(-3)
P 		258.8
(-1.8)
P 		390.1
(-0.6)
P 		362.9
(-0.8)
P 		620
C 963.2
(3)
P 		207.1
(-2.4)
P 		128.5
(-3)
P 		304.8
(-1.7)
P 		459.2
(-0.6)
P 		434.2
(-0.8)
P 		835
avr 801.8
(3) 		222.8
(-2.2) 		135.8
(-3) 		260.9
(-1.9) 		399
(-0.6) 		402.7
(-0.6) 		666
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 559
1 2 3 4 range
A 206.4
(0.1)
P 		3.9
(-3)
A 		1.9
(-3)
A 		391.8
(3)
P 		390
B 164.2
(-1.3)
P 		23.4
(-2.8)
P 		8.3
(-3)
A 		561.2
(3)
P 		553
C 172.9
(-0.7)
P 		5.2
(-3)
A 		14.9
(-2.9)
A 		447
(3)
P 		442
avr 181.2
(-0.7) 		10.8
(-3) 		8.4
(-3) 		466.7
(3) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 126.3
(3)
P 		71.5
(-0.4)
P 		30.8
(-3)
P 		55.6
(-1.4)
P 		105
(1.7)
P 		100.1
(1.4)
P 		96
B 263.4
(3)
P 		86.6
(-1.6)
P 		33.4
(-3)
P 		68.5
(-2.1)
P 		158.5
(0.3)
P 		135.3
(-0.3)
P 		230
C 357
(3)
P 		63.2
(-2.4)
P 		32.7
(-3)
P 		61.3
(-2.5)
P 		148.6
(-0.9)
P 		145.4
(-0.9)
P 		324
avr 248.9
(3) 		73.8
(-1.9) 		32.3
(-3) 		61.8
(-2.2) 		137.4
(-0.1) 		126.9
(-0.4) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4290
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.4 NCBI
Target Description Y110A2AL.4 /REP_DB=WormBase Gene ID /WP=CE25192 /TR=Q9N4A4 /GB=AAF60404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061979(10), NM_182232(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061979 NCBI Caenorhabditis elegans Y110A2AL.4a (Y110A2AL.4) mRNA, complete cds. 10/11 None
NM_182232 NCBI Caenorhabditis elegans Y110A2AL.4b (Y110A2AL.4) mRNA, complete cds. 10/11 None
SNAP00000036277 ENSEMBL cdna:SNAP chromosome:CEL140:II:2839488:2840068:1 10/11 None
Y110A2AL.4a ENSEMBL cdna:known chromosome:CEL140:II:2839316:2840385:1 gene:Y110A2AL.4 10/11 A 
Y110A2AL.4b ENSEMBL cdna:known chromosome:CEL140:II:2839488:2840113:1 gene:Y110A2AL.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036297 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2839486-2840286(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y110A2AL.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38586 Hypothetical protein Y110A2AL.4a [Caenorhabditis elegans] ref|NP_494380.2| Y110A2AL.4a [Caenorhabditis elegans] 3.0E-94
blast AAO38587 Hypothetical protein Y110A2AL.4b [Caenorhabditis elegans] ref|NP_872032.1| Y110A2AL.4b [Caenorhabditis elegans] 8.0E-83
blast AAO38586 Hypothetical protein Y110A2AL.4a [Caenorhabditis elegans] ref|NP_494380.2| Y110A2AL.4a [Caenorhabditis elegans] 9.0E-82
blast AAO38587 Hypothetical protein Y110A2AL.4b [Caenorhabditis elegans] ref|NP_872032.1| Y110A2AL.4b [Caenorhabditis elegans] 1.0E-81
Sequence
Target Sequence 
>C. ELEGANS:187531_AT
cttctgctcatattcctagctgtcaactccgatgctcaacttcttcctccggtcaagaat
atactccaaaaccaccttgacatcttccagaaagccgttgacgcaggagataaggcgacg
atgagcaaaatgataccgttgaatcacatttccgatgaaacactagataaattcatcaag
gctcacaagtcgatgaagatgactgcaaaaagcgcgacgttcatcggcactggtaatacc
cagtctggtatctctggagtagtggagtacgcaagaggaggccgtactattctgcttgaa
gtagttgttgagaagagcccttctagtccatctgcctacaagtttgcgagtatcagaaca
ccaccggtcccttcccaacgacgcagtttcccgacttgtatgctgggattggtcgcgtgc
tacctccatctcattgatgttttgccaggcagtgccgaggaaattctttcaaggcatgca
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTGCTCATATTCCTAGCTGTCA 247 221 28 Antisense
GCTCATATTCCTAGCTGTCAACTCC 472 301 33 Antisense
CAACTTCTTCCTCCGGTCAAGAATA 678 187 64 Antisense
TCCTCCGGTCAAGAATATACTCCAA 360 587 72 Antisense
TCAAGAATATACTCCAAAACCACCT 70 633 80 Antisense
CAGAAAGCCGTTGACGCAGGAGATA 93 205 115 Antisense
GCAGGAGATAAGGCGACGATGAGCA 605 309 130 Antisense
GGCGACGATGAGCAAAATGATACCG 437 541 141 Antisense
GATACCGTTGAATCACATTTCCGAT 451 423 159 Antisense
GAATCACATTTCCGATGAAACACTA 390 327 168 Antisense
GGAAATTCTTTCAAGGCATGCAACA 467 527 486 Antisense
Sequence Source Affymetrix Proprietary Database