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[187530_at]

Description Y71F9AL.11 /REP_DB=WormBase Gene ID /WP=CE22875 /TR=Q9N4I7 /GB=AAF35996.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 09      6grp_total > 34      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 264.2
(3)
P 		181.1
(-3)
A 		190.2
(-2.3)
P 		243.9
(1.5)
M 		83
B 266.5
(3)
M 		206.7
(0.2)
P 		136.9
(-3)
A 		155.4
(-2.1)
M 		130
C 315.8
(3)
M 		242.1
(0.3)
A 		151
(-3)
M 		254.2
(0.8)
P 		165
avr 282.2
(3) 		210
(-0.5) 		159.4
(-3) 		217.8
(-0.1) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 168.7
(3)
A 		164.1
(2.6)
A 		120.9
(-1.1)
A 		121.5
(-1)
A 		98.4
(-3)
A 		164.4
(2.6)
A 		70
B 189.9
(3)
M 		116.5
(-0.6)
A 		146.1
(0.9)
A 		67
(-3)
A 		144.9
(0.8)
A 		110.9
(-0.9)
M 		123
C 179.1
(1.2)
A 		155
(-0)
M 		213
(3)
P 		145.4
(-0.5)
A 		132.4
(-1.2)
P 		97.3
(-3)
P 		116
avr 179.2
(3) 		145.2
(-0) 		160
(1.3) 		111.3
(-3) 		125.2
(-1.8) 		124.2
(-1.9) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 96.2
(3)
P 		39.3
(-2.6)
A 		49.7
(-1.6)
P 		35.7
(-3)
M 		61
B 85
(3)
M 		51.1
(-0.8)
P 		31.7
(-3)
A 		33.1
(-2.8)
M 		53
C 104.5
(3)
M 		69.6
(-0.4)
A 		52.6
(-2.1)
M 		42.9
(-3)
P 		62
avr 95.2
(3) 		53.3
(-1.3) 		44.7
(-2.2) 		37.2
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 31.1
(-2.1)
A 		58.4
(3)
A 		26.3
(-3)
A 		30.8
(-2.2)
A 		29.7
(-2.4)
A 		40
(-0.4)
A 		32
B 66.1
(3)
M 		38.8
(-0.4)
A 		35.5
(-0.8)
A 		17.7
(-3)
A 		58.9
(2.1)
A 		41.3
(-0.1)
M 		48
C 66.4
(3)
A 		47.3
(-0.1)
M 		54.2
(1)
P 		29.2
(-3)
A 		42.9
(-0.8)
P 		32.6
(-2.5)
P 		37
avr 54.5
(3) 		48.2
(1.7) 		38.7
(-0.3) 		25.9
(-3) 		43.8
(0.8) 		38
(-0.5) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.262
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.11 NCBI
Target Description Y71F9AL.11 /REP_DB=WormBase Gene ID /WP=CE22875 /TR=Q9N4I7 /GB=AAF35996.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058657 NCBI Caenorhabditis elegans Y71F9AL.11 (Y71F9AL.11) mRNA, complete cds. 11/11 None
GENEFINDER00000005914 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2863451:2869259:1 10/11 None
Y71F9AL.11 ENSEMBL cdna:known chromosome:CEL140:I:2862404:2864447:1 gene:Y71F9AL.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2862403-2864447(+) 91.2 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.11
Entrez Gene 190587 Entrez gene
SwissProt Q9N4I7 EMBL-EBI
WormBase CE22875 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35996 Hypothetical protein Y71F9AL.11 [Caenorhabditis elegans] ref|NP_491058.1| Y71F9AL.11 [Caenorhabditis elegans] 2.0E-73
blast AAF35997 Hypothetical protein Y71F9AL.10 [Caenorhabditis elegans] ref|NP_491059.2| Y71F9AL.10 [Caenorhabditis elegans] 2.0E-72
blast AAF35996 Hypothetical protein Y71F9AL.11 [Caenorhabditis elegans] ref|NP_491058.1| Y71F9AL.11 [Caenorhabditis elegans] 2.0E-57
blast CAE60594 Hypothetical protein CBG04230 [Caenorhabditis briggsae] 4.0E-56
Sequence
Target Sequence 
>C. ELEGANS:187530_AT
ggccaccaaggtgtcgatttttcgatttttaagcgaaagtcgaaaatctgaaatttttca
gttttttatagaaaaaccggcaggcctgccttaccttcacctccaattttccattttcca
cctcttccagccccaggcatctatctctctctctctctctctctctctctctctctctct
ctctctctctcatctgtcatcaattcaatgctccatccgtgtccgtgtccattctccggt
gccccgcgacccccgtgaccgtctccacgtgtctgcgtctccacctcgtctcgcactatc
tccacctcttaatttctctgcgccctccgtgtctctcgtcgccgggcgccgaatcaatga
acacctcgggaaggcagccacacagcagcagcagcagcagtcccgttttgtgcatgaccc
ccatcatcatcatttgaaaagaaaaaaaagaacgagaattttgccctgcgtcacccaatt
ccccattatatttagtgtcgtctttccccgttacagagagatgagaccttcattcattaa
tcccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCACCAAGGTGTCGATTTTTCGA 521 539 27 Antisense
CTCTCTCATCTGTCATCAATTCAAT 177 231 211 Antisense
TCATCAATTCAATGCTCCATCCGTG 13 621 223 Antisense
GGGCGCCGAATCAATGAACACCTCG 174 491 370 Antisense
TCGGGAAGGCAGCCACACAGCAGCA 348 603 392 Antisense
TGACCCCCATCATCATCATTTGAAA 458 569 441 Antisense
GAACGAGAATTTTGCCCTGCGTCAC 313 347 476 Antisense
TCACCCAATTCCCCATTATATTTAG 339 627 497 Antisense
TTATATTTAGTGTCGTCTTTCCCCG 358 677 512 Antisense
CGTCTTTCCCCGTTACAGAGAGATG 637 245 525 Antisense
TGAGACCTTCATTCATTAATCCCCT 309 569 548 Antisense
Sequence Source Affymetrix Proprietary Database