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[187529_s_at]

Description ZK1307.4 /REP_DB=WormBase Gene ID /WP=CE25681 /TR=SW:Q09362 /GB=CAA87432.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 6.6
(-3)
A 		66
(3)
A 		13.5
(-2.3)
A 		17.1
(-1.9)
A 		59
B 1.7
(-3)
A 		74
(3)
A 		57.8
(1.7)
A 		9
(-2.4)
A 		72
C 5.9
(-3)
A 		39.3
(-1.7)
A 		7.3
(-2.9)
A 		158.2
(3)
P 		152
avr 4.7
(-3) 		59.8
(2.8) 		26.2
(-0.7) 		61.4
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 778
1 2 3 4 5 6 range
A 48.5
(-2.9)
A 		36.9
(-3)
A 		46.3
(-2.9)
A 		67.3
(-2.7)
A 		345.6
(-0.3)
P 		730.7
(3)
P 		694
B 29.1
(-3)
A 		57.5
(-2.7)
A 		36
(-2.9)
A 		49.6
(-2.8)
A 		409
(0.6)
P 		665.5
(3)
P 		636
C 59.8
(-2.9)
A 		47.4
(-3)
A 		81.1
(-2.7)
A 		118.9
(-2.4)
A 		337.2
(-0.7)
P 		807.2
(3)
P 		760
avr 45.8
(-3) 		47.3
(-3) 		54.5
(-2.9) 		78.6
(-2.7) 		363.9
(-0.2) 		734.5
(3) 		689
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.4
(-3)
A 		14.3
(3)
A 		3.5
(-2.4)
A 		2.5
(-2.9)
A 		12
B 0.5
(-3)
A 		18.3
(3)
A 		13.4
(1.3)
A 		1.9
(-2.5)
A 		18
C 2
(-3)
A 		11.3
(-0.7)
A 		2.6
(-2.9)
A 		26.7
(3)
P 		25
avr 1.6
(-3) 		14.6
(3) 		6.5
(-0.7) 		10.4
(1.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 8.9
(-3)
A 		13.1
(-2.9)
A 		10.1
(-3)
A 		17.1
(-2.7)
A 		104.3
(0.4)
P 		177.9
(3)
P 		169
B 10.1
(-3)
A 		19.1
(-2.7)
A 		8.7
(-3)
A 		13.1
(-2.9)
A 		166.2
(0.9)
P 		248.2
(3)
P 		240
C 22.2
(-2.8)
A 		14.5
(-3)
A 		20.6
(-2.9)
A 		23.9
(-2.8)
A 		109.1
(-0.8)
P 		270.2
(3)
P 		256
avr 13.7
(-3) 		15.6
(-2.9) 		13.1
(-3) 		18
(-2.9) 		126.5
(0.1) 		232.1
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187529_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3022
Sequence Type Exemplar sequence
Representative Public ID ZK1307.4 NCBI
Target Description ZK1307.4 /REP_DB=WormBase Gene ID /WP=CE25681 /TR=SW:Q09362 /GB=CAA87432.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063678(11), NM_063677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063678 NCBI Caenorhabditis elegans ZK1307.3 (ZK1307.3) mRNA, complete cds. 11/11 None
NM_063677 NCBI Caenorhabditis elegans ZK1307.4 (ZK1307.4) mRNA, complete cds. 11/11 None
SNAP00000021425 ENSEMBL cdna:SNAP chromosome:CEL140:II:9650942:9651648:-1 11/11 None
SNAP00000021426 ENSEMBL cdna:SNAP chromosome:CEL140:II:9652290:9652878:-1 11/11 None
GENEFINDER00000021431 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9652290:9652878:-1 11/11 None
GENEFINDER00000021436 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9650942:9651648:-1 9/11 None
ZK1307.4 ENSEMBL cdna:known chromosome:CEL140:II:9650942:9651648:-1 gene:ZK1307.4 11/11 None
ZK1307.3 ENSEMBL cdna:known chromosome:CEL140:II:9652290:9652878:-1 gene:ZK1307.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9650938-9651645(-) 100.0 100.0
chrII:9652286-9652875(-) 90.23 90.23
Public Domain and Genome References
Gene Title

Ensembl ZK1307.4
ZK1307.3
Entrez Gene 191560 Entrez gene
191561 Entrez gene
SwissProt Q09361 EMBL-EBI
Q09362 EMBL-EBI
WormBase CE01692 Wormbase
CE25681 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87431 Hypothetical protein ZK1307.3 [Caenorhabditis elegans] ref|NP_496079.1| ZK1307.3 [Caenorhabditis elegans] sp|Q09361|YS13_CAEEL Hypothetical protein ZK1307.3 in chromosome II 7.0E-53
blast CAA87432 Hypothetical protein ZK1307.4 [Caenorhabditis elegans] ref|NP_496078.1| ZK1307.4 [Caenorhabditis elegans] sp|Q09362|YS14_CAEEL Hypothetical protein ZK1307.4 in chromosome II 4.0E-52
blast CAA87432 Hypothetical protein ZK1307.4 [Caenorhabditis elegans] ref|NP_496078.1| ZK1307.4 [Caenorhabditis elegans] sp|Q09362|YS14_CAEEL Hypothetical protein ZK1307.4 in chromosome II 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.0E-30
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.5E-31
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.7E-7
Sequence
Target Sequence 
>C. ELEGANS:187529_S_AT
gtcgaaatttcgttggatccaccagtgtgcccaatccaggccaatggaggagtttcgaag
cacaagatgatcaatcataccgatcgccatatggcttataaggtaaaatcctcaaacaac
tcaaactacagcgtcaacttaatctatggaatcttgaaagtttgcgatgtcaaggaattg
gtcatcaccagaaagcctggaaagccacaagccgacaagttgatcatccagtactgtatg
gtagttgatgagaacacggatccaaaaccattgttcgcaaatggagtgccaccaggagag
ctttctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAAATTTCGTTGGATCCACCAG 709 471 19 Antisense
GGAATCTTGAAAGTTTGCGATGTCA 381 533 166 Antisense
TTGGTCATCACCAGAAAGCCTGGAA 545 705 196 Antisense
AAGCCTGGAAAGCCACAAGCCGACA 413 147 211 Antisense
GCCACAAGCCGACAAGTTGATCATC 418 279 222 Antisense
GCCGACAAGTTGATCATCCAGTACT 277 285 229 Antisense
AGTTGATCATCCAGTACTGTATGGT 376 65 236 Antisense
CGGATCCAAAACCATTGTTCGCAAA 462 243 275 Antisense
TGTTCGCAAATGGAGTGCCACCAGG 355 563 290 Antisense
TGGAGTGCCACCAGGAGAGCTTTCT 491 549 300 Antisense
AGTGCCACCAGGAGAGCTTTCTGGA 13 61 303 Antisense
Sequence Source Affymetrix Proprietary Database