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[187526_at]

Description ZK1098.7 /REP_DB=WormBase Gene ID /WP=CE00566 /TR=SW:P34748 /GB=CAA80139.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 01      4grp_high_8_8 > 54      6grp_highest_nonorm > 32      6grp_total > 13      4grp_total > 58      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 949
1 2 3 4 range
A 1157.9
(-2.1)
P 		1664.6
(2.3)
P 		1746.9
(3)
P 		1057.5
(-3)
P 		689
B 1117.7
(-3)
P 		1866.6
(3)
P 		1830.5
(2.7)
P 		1123.9
(-3)
P 		749
C 1408.9
(-0.2)
P 		1918.4
(3)
P 		1777.2
(2.1)
P 		969.2
(-3)
P 		949
avr 1228.2
(-1.6) 		1816.5
(3) 		1784.9
(2.8) 		1050.2
(-3) 		766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 894
1 2 3 4 5 6 range
A 1455.1
(2.1)
P 		1579.7
(3)
P 		1475.7
(2.2)
P 		1285.6
(0.8)
P 		1019.7
(-1.2)
P 		776.5
(-3)
P 		803
B 1574.7
(2.8)
P 		1597.9
(3)
P 		1556.5
(2.6)
P 		1234.4
(-0.8)
P 		1094.7
(-2.3)
P 		1025.4
(-3)
P 		573
C 1323.1
(0.1)
P 		1619.7
(2.6)
P 		1302.7
(-0.1)
P 		1670.4
(3)
P 		962.1
(-3)
P 		1177.3
(-1.2)
P 		708
avr 1451
(1.5) 		1599.1
(3) 		1445
(1.5) 		1396.8
(1) 		1025.5
(-2.7) 		993.1
(-3) 		606
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 421.6
(2.3)
P 		361.3
(1.1)
P 		456.7
(3)
P 		154.8
(-3)
P 		302
B 356.4
(0.2)
P 		461
(3)
P 		424.2
(2)
P 		239.5
(-3)
P 		222
C 466.4
(1)
P 		551.5
(2.1)
P 		619.4
(3)
P 		163.4
(-3)
P 		456
avr 414.8
(1.4) 		457.9
(2.2) 		500.1
(3) 		185.9
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 268.2
(-1.7)
P 		561.8
(3)
P 		321.4
(-0.9)
P 		326
(-0.8)
P 		307.7
(-1.1)
P 		189.1
(-3)
P 		373
B 547.9
(3)
P 		531.9
(2.6)
P 		378
(-1.6)
P 		327
(-3)
P 		444.8
(0.2)
P 		382.4
(-1.5)
P 		221
C 490.4
(2.9)
P 		494.2
(3)
P 		331.6
(-2.3)
P 		335.9
(-2.2)
P 		311.3
(-3)
P 		394.1
(-0.3)
P 		183
avr 435.5
(0.3) 		529.3
(3) 		343.7
(-2.4) 		329.6
(-2.8) 		354.6
(-2.1) 		321.9
(-3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6184
Sequence Type Exemplar sequence
Representative Public ID ZK1098.7 NCBI
Target Description ZK1098.7 /REP_DB=WormBase Gene ID /WP=CE00566 /TR=SW:P34748 /GB=CAA80139.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066698 NCBI Caenorhabditis elegans ZK1098.7 (ZK1098.7) mRNA, complete cds. 11/11 None
SNAP00000005010 ENSEMBL cdna:SNAP chromosome:CEL140:III:9523058:9523562:-1 11/11 None
GENEFINDER00000005025 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9523058:9523562:-1 11/11 None
ZK1098.7.1 ENSEMBL cdna:known chromosome:CEL140:III:9523009:9523568:-1 gene:ZK1098.7 11/11 None
ZK1098.7.2 ENSEMBL cdna:known chromosome:CEL140:III:9523025:9523570:-1 gene:ZK1098.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9523053-9523558(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1098.7
Entrez Gene 191523 Entrez gene
SwissProt P34748 EMBL-EBI
WormBase CE00566 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80139 Hypothetical protein ZK1098.7 [Caenorhabditis elegans] ref|NP_499099.1| ZK1098.7 [Caenorhabditis elegans] sp|P34748|YO67_CAEEL Hypothetical protein ZK1098.7 in chromosome III 1.0E-71
blast CAE65191 Hypothetical protein CBG10064 [Caenorhabditis briggsae] 2.0E-64
Sequence
Target Sequence 
>C. ELEGANS:187526_AT
ggcttcatttatcactcgtgcggaacgttctggtaatattttttcgcgagtcactggact
catccgtgctggtcaactgaactgggcagatcgtcctttgtggtatgatgtgtacgtttc
atctccaccattaacaccgccagattggaatgtaaaattagcaaagtacgacgaaccaat
tcgctctattttctacgaggaagatgttctcagagcaaagttctacaagacatacagaag
tacggctggtattcaagtggatagctcaagaacaagcgtctctcagcagttcatcaacga
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCATTTATCACTCGTGCGGAA 310 537 15 Antisense
ATCACTCGTGCGGAACGTTCTGGTA 581 27 25 Antisense
GGTAATATTTTTTCGCGAGTCACTG 604 503 46 Antisense
CGAGTCACTGGACTCATCCGTGCTG 116 249 61 Antisense
TCCGTGCTGGTCAACTGAACTGGGC 471 593 77 Antisense
TGGGCAGATCGTCCTTTGTGGTATG 288 555 97 Antisense
TGATGTGTACGTTTCATCTCCACCA 567 565 120 Antisense
TCCACCATTAACACCGCCAGATTGG 315 587 138 Antisense
GAACCAATTCGCTCTATTTTCTACG 537 345 187 Antisense
AGCTCAAGAACAAGCGTCTCTCAGC 669 79 277 Antisense
GTCTCTCAGCAGTTCATCAACGAAT 533 469 292 Antisense
Sequence Source Affymetrix Proprietary Database