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[187525_s_at]

Description B0280.5 /REP_DB=WormBase Gene ID /WP=CE00812 /TR=SW:P41996 /GB=AAA19083.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 36.7
(-3)
A 		141
(-0.9)
M 		260.5
(1.5)
P 		335.8
(3)
P 		299
B 100.3
(-3)
A 		123.9
(-2.1)
A 		185.8
(0.1)
P 		264.8
(3)
P 		165
C 51.4
(-3)
P 		155.8
(0.7)
M 		176.2
(1.5)
P 		218.7
(3)
P 		167
avr 62.8
(-3) 		140.2
(-0.8) 		207.5
(1.1) 		273.1
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8805
1 2 3 4 5 6 range
A 44.6
(-3)
A 		117
(-3)
A 		336.9
(-2.8)
P 		785.2
(-2.5)
P 		4730.2
(0.2)
P 		8849.9
(3)
P 		8805
B 63.3
(-3)
A 		94.8
(-3)
P 		321.2
(-2.8)
P 		727.3
(-2.4)
P 		4683.1
(0.9)
P 		7184.8
(3)
P 		7122
C 54.8
(-3)
M 		94.7
(-3)
P 		373.2
(-2.7)
P 		745
(-2.4)
P 		5066.2
(1.3)
P 		7070.6
(3)
P 		7016
avr 54.2
(-3) 		102.2
(-3) 		343.8
(-2.8) 		752.5
(-2.5) 		4826.5
(0.7) 		7701.8
(3) 		7648
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 13.4
(-3)
A 		30.6
(-1.1)
M 		68.1
(3)
P 		49.2
(0.9)
P 		55
B 32
(-2.7)
A 		30.6
(-3)
A 		43.1
(-0.1)
P 		56.4
(3)
P 		26
C 17
(-3)
P 		44.8
(0.8)
M 		61.4
(3)
P 		36.9
(-0.3)
P 		44
avr 20.8
(-3) 		35.3
(-0.6) 		57.5
(3) 		47.5
(1.4) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2671
1 2 3 4 5 6 range
A 8.2
(-3)
A 		41.6
(-2.9)
A 		73.4
(-2.8)
P 		199.2
(-2.5)
P 		1427.4
(1)
P 		2154.7
(3)
P 		2147
B 22
(-3)
A 		31.5
(-3)
P 		78
(-2.9)
P 		192.6
(-2.6)
P 		1902.7
(1.2)
P 		2679.2
(3)
P 		2657
C 20.3
(-3)
M 		28.9
(-3)
P 		95
(-2.8)
P 		149.8
(-2.7)
P 		1639.3
(1.1)
P 		2367
(3)
P 		2347
avr 16.8
(-3) 		34
(-3) 		82.1
(-2.8) 		180.5
(-2.6) 		1656.5
(1.1) 		2400.3
(3) 		2384
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187525_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6330
Sequence Type Exemplar sequence
Representative Public ID B0280.5 NCBI
Target Description B0280.5 /REP_DB=WormBase Gene ID /WP=CE00812 /TR=SW:P41996 /GB=AAA19083.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066150 NCBI Caenorhabditis elegans B0280.5 (B0280.5) mRNA, complete cds. 11/11 A 
SNAP00000041604 ENSEMBL cdna:SNAP chromosome:CEL140:III:7102160:7103910:-1 11/11 None
GENEFINDER00000041619 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7102160:7106384:-1 11/11 None
B0280.5 ENSEMBL cdna:known chromosome:CEL140:III:7102016:7103914:-1 gene:B0280.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7102157-7104098(-) 88.81 100.0
Public Domain and Genome References
Gene Title
Ensembl B0280.5
Entrez Gene 175991 Entrez gene
SwissProt P41996 EMBL-EBI
WormBase CE31868 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19083 Hypothetical protein B0280.5 [Caenorhabditis elegans] ref|NP_498551.3| B0280.5 [Caenorhabditis elegans] sp|P41996|B028_CAEEL Cytokinesis B0280.5 protein precursor 0.0
blast T15299 hypothetical protein B0280.5 - Caenorhabditis elegans 0.0
blast CAE72761 Hypothetical protein CBG20011 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.5E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 9.9E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 8.0E-23
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.1E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 6.1E-11
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.5E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 9.9E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 8.0E-23
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.1E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 6.1E-11
Sequence
Target Sequence 
>C. ELEGANS:187525_S_AT
attcggacaatgctcatcgtcattcactgcttgcactaacggccgtgccatcgtcatgtt
ctgtccagcaggactcaagttctccgagtctaccgtacgttgcgactacgagtccaatgt
ttccgaatgccaagagacgtcgggtgaagaatctggagaagcttccggtgaacaatctgg
agaaggatctggagaggcttctggtgaggcctctggtgaaagctcaggagagggatccgg
tgtggaagagcaaaatcaatgcgttggactggacaatggacttcatgctatcggatgctc
tccacgtgttctctcttgccagaatggacacgttgatatcttcgagtgcccatccagcct
ggttttcaacgatcaatctttgatctgcgattacccacaaacatcgttgaaatgcctcat
cgaagacactattctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGGACAATGCTCATCGTCATTC 630 9 1011 Antisense
GTCATTCACTGCTTGCACTAACGGC 253 467 1029 Antisense
GTCCAGCAGGACTCAAGTTCTCCGA 225 477 1073 Antisense
CGAGTCTACCGTACGTTGCGACTAC 87 247 1095 Antisense
GACTACGAGTCCAATGTTTCCGAAT 63 373 1114 Antisense
GAGGCTTCTGGTGAGGCCTCTGGTG 477 403 1204 Antisense
TGGACTTCATGCTATCGGATGCTCT 636 547 1287 Antisense
CGTGTTCTCTCTTGCCAGAATGGAC 160 245 1315 Antisense
GACACGTTGATATCTTCGAGTGCCC 81 367 1337 Antisense
TGATCTGCGATTACCCACAAACATC 625 565 1391 Antisense
GCCTCATCGAAGACACTATTCTCAT 204 283 1424 Antisense
Sequence Source Affymetrix Proprietary Database