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[187524_at]

Description ZK353.7 /REP_DB=WormBase Gene ID /WP=CE00391 /TR=SW:P34630 /GB=AAA28197.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 18      4grp_high_8_8 > 60      6grp_highest_nonorm > 64      6grp_total > 65      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 644
1 2 3 4 range
A 728
(-0.6)
P 		859.9
(0.9)
P 		1050.2
(3)
P 		513.2
(-3)
P 		537
B 783.6
(0.3)
P 		807.5
(0.5)
P 		1070.6
(3)
P 		426.4
(-3)
P 		644
C 850.7
(0.9)
P 		790.9
(0.3)
P 		1056.5
(3)
P 		455.2
(-3)
P 		601
avr 787.4
(0.3) 		819.4
(0.6) 		1059.1
(3) 		464.9
(-3) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 692.2
(-3)
P 		889.4
(0.9)
P 		852.5
(0.2)
P 		955.6
(2.3)
P 		763.9
(-1.6)
P 		992.9
(3)
P 		301
B 617.6
(-3)
P 		679.4
(-1.7)
P 		901.6
(3)
P 		699.7
(-1.3)
P 		758.1
(-0)
P 		805.8
(1)
P 		284
C 777.3
(-1.7)
P 		722.4
(-3)
P 		935.3
(2.1)
P 		916.1
(1.6)
P 		805.6
(-1)
P 		973.8
(3)
P 		251
avr 695.7
(-3) 		763.7
(-1.2) 		896.5
(2.3) 		857.1
(1.2) 		775.9
(-0.9) 		924.2
(3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 265.1
(2.7)
P 		186.7
(0.4)
P 		274.6
(3)
P 		75.1
(-3)
P 		200
B 249.9
(3)
P 		199.4
(1.1)
P 		248.1
(2.9)
P 		90.9
(-3)
P 		159
C 281.6
(1.2)
P 		227.4
(0.1)
P 		368.2
(3)
P 		76.8
(-3)
P 		291
avr 265.5
(2.1) 		204.5
(0.4) 		297
(3) 		80.9
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 127.6
(-3)
P 		316.3
(3)
P 		185.7
(-1.2)
P 		242.4
(0.7)
P 		230.5
(0.3)
P 		241.7
(0.6)
P 		189
B 214.9
(-1.6)
P 		226.1
(-1)
P 		218.9
(-1.4)
P 		185.3
(-3)
P 		308
(3)
P 		300.5
(2.6)
P 		123
C 288.1
(1.4)
P 		220.4
(-1.5)
P 		238
(-0.7)
P 		184.2
(-3)
P 		260.7
(0.2)
P 		326
(3)
P 		142
avr 210.2
(-2.6) 		254.3
(0.5) 		214.2
(-2.3) 		204
(-3) 		266.4
(1.4) 		289.4
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6161
Sequence Type Exemplar sequence
Representative Public ID ZK353.7 NCBI
Target Description ZK353.7 /REP_DB=WormBase Gene ID /WP=CE00391 /TR=SW:P34630 /GB=AAA28197.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066454 NCBI Caenorhabditis elegans ZK353.7 (ZK353.7) mRNA, complete cds. 11/11 None
GENEFINDER00000044102 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8402106:8403522:-1 11/11 None
SNAP00000044096 ENSEMBL cdna:SNAP chromosome:CEL140:III:8402438:8403522:-1 11/11 None
ZK353.7 ENSEMBL cdna:known chromosome:CEL140:III:8402018:8403522:-1 gene:ZK353.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8402433-8403518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK353.7
Entrez Gene 176186 Entrez gene
SwissProt P34630 EMBL-EBI
WormBase CE00391 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1595745_S_AT similar to Copper homeostasis protein cutC homolog cfa
CANINE_2:CFA.1816.1.A1_AT similar to Copper homeostasis protein cutC homolog cfa
CANINE_2:CFA.1816.1.A1_S_AT similar to Copper homeostasis protein cutC homolog cfa
CANINE_2:CFAAFFX.14982.1.S1_AT similar to Copper homeostasis protein cutC homolog cfa
DROSOPHILA_2:1635683_AT dm
DROSGENOME1:152007_AT dm
CHICKEN:GGAAFFX.12286.1.S1_S_AT cutC copper transporter homolog (E.coli) gga
CHICKEN:GGAAFFX.22243.1.S1_X_AT cutC copper transporter homolog (E.coli) gga
HU35KSUBA:RC_AA180208_AT cutC copper transporter homolog (E.coli) hs
HG-U133A:218970_S_AT cutC copper transporter homolog (E.coli) hs
HG-U133_PLUS_2:218970_S_AT cutC copper transporter homolog (E.coli) hs
HG-U133A_2:218970_S_AT cutC copper transporter homolog (E.coli) hs
U133_X3P:G7705727_3P_S_AT cutC copper transporter homolog (E.coli) hs
HG-U95B:54670_AT cutC copper transporter homolog (E.coli) hs
MG-U74BV2:163160_AT cutC copper transporter homolog (E.coli) mm
MOE430A:1418473_AT cutC copper transporter homolog (E.coli) mm
MOUSE430A_2:1418473_AT cutC copper transporter homolog (E.coli) mm
MOUSE430_2:1418473_AT cutC copper transporter homolog (E.coli) mm
MG-U74BV2:110687_AT cutC copper transporter homolog (E.coli) mm
MG-U74CV2:169914_I_AT CutC copper transporter homolog (E.coli), mRNA (cDNA clone MGC:25524 IMAGE:3582902) mm
MU19KSUBB:TC32264_AT CutC copper transporter homolog (E.coli), mRNA (cDNA clone MGC:25524 IMAGE:3582902) mm
RG-U34B:RC_AA999030_AT cutC copper transporter homolog (E.coli) (predicted) rn
RAE230B:1385024_AT cutC copper transporter homolog (E.coli) (predicted) rn
RAT230_2:1385024_AT cutC copper transporter homolog (E.coli) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA28197 Hypothetical protein ZK353.7 [Caenorhabditis elegans] ref|NP_498855.1| ZK353.7 [Caenorhabditis elegans] sp|P34630|CUTC_CAEEL Copper homeostasis protein cutC homolog 1.0E-141
blast AAA28197 Hypothetical protein ZK353.7 [Caenorhabditis elegans] ref|NP_498855.1| ZK353.7 [Caenorhabditis elegans] sp|P34630|CUTC_CAEEL Copper homeostasis protein cutC homolog 1.0E-135
blast CAE71264 Hypothetical protein CBG18146 [Caenorhabditis briggsae] 1.0E-121
blast CAE71264 Hypothetical protein CBG18146 [Caenorhabditis briggsae] 1.0E-117
blast NP_001011220 hypothetical protein LOC496655 [Xenopus tropicalis] gb|AAH87780.1| Hypothetical LOC496655 [Xenopus tropicalis] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR005627 EMBL-EBI CutC family 2.9E-63
Sequence
Target Sequence 
>C. ELEGANS:187524_AT
catccgtcggatttgtgtctattctgagctacaagtatcccgatattccactttattgta
tgattcgccaacgggcaggcgattttgtgtataatgaagacgaaatggcagcgaatatgg
aagacgttgaatggctcaaaaaagctggtgccacaggattcgtttttggagcattaacat
cagccggttcattggatcgtacatcatgtcaatcaataattgaaactgcccgtccacatc
ctgtcacatttcatcgagcaattgacgtcgcctatgactggaaaacttgtcttgaggacg
ctattgatgttggattcaaagctgttttgacaagtggacaagagccgtcagcactcgacg
gagtttatatcattcgagaaatgcaagaacttcacaaaggaaagatcgatgttctcgcag
gttgtggtgtgaacagttcgaatgtcgcgaatcttgtcgaatggactaaatgtcactggt
atcatgcttcagcttctgttgccaagaaaaatgctccattgaataaggtgtcaatgggaa
aacaggacaatcagccatcacgtgtcacttctttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCGTCGGATTTGTGTCTATTCT 128 211 149 Antisense
GTATCCCGATATTCCACTTTATTGT 416 455 183 Antisense
AAGCTGGTGCCACAGGATTCGTTTT 5 149 290 Antisense
CAGCCGGTTCATTGGATCGTACATC 520 203 329 Antisense
CAATAATTGAAACTGCCCGTCCACA 104 179 362 Antisense
CATCCTGTCACATTTCATCGAGCAA 497 211 385 Antisense
GAGCAATTGACGTCGCCTATGACTG 283 391 404 Antisense
GATCGATGTTCTCGCAGGTTGTGGT 510 417 552 Antisense
GTATCATGCTTCAGCTTCTGTTGCC 96 455 627 Antisense
AAAACAGGACAATCAGCCATCACGT 675 129 687 Antisense
GCCATCACGTGTCACTTCTTTGGAA 387 281 702 Antisense
Sequence Source Affymetrix Proprietary Database