[Home] | [Total List]

[187522_at]

Description F25B5.1 /REP_DB=WormBase Gene ID /WP=CE01918 /TR=SW:Q09313 /GB=AAC46523.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 34      4grp_high_8_8 > 56      6grp_highest_nonorm > 44      6grp_total > 61      4grp_total > 63      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 687
1 2 3 4 range
A 1289.3
(3)
P 		653.5
(-3)
P 		1029.9
(0.6)
P 		695.1
(-2.6)
P 		636
B 1264.6
(3)
P 		986.9
(-0.4)
P 		1228.4
(2.6)
P 		779.3
(-3)
P 		485
C 1174.8
(0.9)
P 		907.9
(-2.4)
P 		1340.9
(3)
P 		858.1
(-3)
P 		483
avr 1242.9
(3) 		849.4
(-2.1) 		1199.7
(2.4) 		777.5
(-3) 		465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1403
1 2 3 4 5 6 range
A 1396.4
(-1.7)
P 		1520.3
(-1)
P 		2223.8
(3)
P 		1926.9
(1.3)
P 		1548.5
(-0.8)
P 		1167.4
(-3)
P 		1056
B 1757.7
(-0.2)
P 		1631.3
(-0.8)
P 		1654.5
(-0.7)
P 		2492.9
(3)
P 		1632.2
(-0.8)
P 		1123.3
(-3)
P 		1370
C 1090.1
(-3)
P 		1911.1
(1.3)
P 		2105.3
(2.3)
P 		2238.5
(3)
P 		1321
(-1.8)
P 		1343.3
(-1.7)
P 		1148
avr 1414.7
(-1.8) 		1687.6
(-0.2) 		1994.5
(1.7) 		2219.4
(3) 		1500.6
(-1.3) 		1211.3
(-3) 		1008
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 469.4
(3)
P 		141.9
(-2.3)
P 		269.2
(-0.3)
P 		101.8
(-3)
P 		368
B 403.3
(3)
P 		243.7
(-1)
P 		284.6
(-0)
P 		166.1
(-3)
P 		237
C 388.9
(1.5)
P 		261
(-0.8)
P 		467.4
(3)
P 		144.7
(-3)
P 		323
avr 420.5
(3) 		215.5
(-1.3) 		340.4
(1.3) 		137.5
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 257.4
(-3)
P 		540.7
(3)
P 		484.3
(1.8)
P 		488.7
(1.9)
P 		467.3
(1.4)
P 		284.2
(-2.4)
P 		283
B 611.6
(1.8)
P 		543
(0.2)
P 		401.8
(-3)
P 		660.3
(2.9)
P 		663.2
(3)
P 		418.9
(-2.6)
P 		261
C 404.1
(-3)
P 		583.1
(3)
P 		535.8
(1.4)
P 		450.2
(-1.5)
P 		427.4
(-2.2)
P 		449.7
(-1.5)
P 		179
avr 424.4
(-1.6) 		555.6
(3) 		474
(0.1) 		533.1
(2.2) 		519.3
(1.7) 		384.3
(-3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7044
Sequence Type Exemplar sequence
Representative Public ID F25B5.1 NCBI
Target Description F25B5.1 /REP_DB=WormBase Gene ID /WP=CE01918 /TR=SW:Q09313 /GB=AAC46523.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065898 NCBI Caenorhabditis elegans F25B5.1 (F25B5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007791 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5966357:5971246:1 11/11 None
SNAP00000007788 ENSEMBL cdna:SNAP chromosome:CEL140:III:5966540:5971205:1 11/11 None
F25B5.1 ENSEMBL cdna:known chromosome:CEL140:III:5966345:5971425:1 gene:F25B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5966343-5971245(+) 100.0 100.0
Public Domain and Genome References
Ensembl F25B5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498299 F25B5.1 [Caenorhabditis elegans] gb|AAC46523.1| Hypothetical protein F25B5.1a [Caenorhabditis elegans] sp|Q09313|YQT1_CAEEL Hypothetical protein F25B5.1 in chromosome III 0.0
blast AAZ32808 Hypothetical protein F25B5.1b [Caenorhabditis elegans] 0.0
blast CAE64345 Hypothetical protein CBG09031 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187522_AT
aatatgatctgctttcacggtcgaccaatgggatgctatgtaagttgtgctaaaactctt
caaatctggaatgatcttgatcgtcatcaacaaaagaaactaaaaagtgaaagaatgcaa
ttattgaaactatcatcttcggtaacctcaatggaaagagctgaaggatatctacttctt
ggatttgctgatgatcgtctttcaatttatgaagaaaaaggaaatggagctgttgattta
gtggggactgttgatgattggcacaagggattgaatgatagaattgttatgagtctacga
acaagagcatcaaagacttcatgtggcacaagattatttattcattcattgacagctcat
cacattgttattcatacagttcttgtcacagcctctaaaattgaacagcacgacttcata
gttgctcacgaacactcaatgagccagccaatcggattcgagtttgtctcatacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATGATCTGCTTTCACGGTCGAC 587 173 2194 Antisense
CACGGTCGACCAATGGGATGCTATG 140 199 2209 Antisense
GAAACTATCATCTTCGGTAACCTCA 571 355 2319 Antisense
GGATATCTACTTCTTGGATTTGCTG 297 509 2359 Antisense
GATTTGCTGATGATCGTCTTTCAAT 272 427 2375 Antisense
GGAGCTGTTGATTTAGTGGGGACTG 320 519 2419 Antisense
GACAGCTCATCACATTGTTATTCAT 199 369 2544 Antisense
TTCATACAGTTCTTGTCACAGCCTC 345 689 2564 Antisense
GCACGACTTCATAGTTGCTCACGAA 464 315 2601 Antisense
CAATGAGCCAGCCAATCGGATTCGA 122 183 2630 Antisense
TCGGATTCGAGTTTGTCTCATACAA 611 605 2645 Antisense
Sequence Source Affymetrix Proprietary Database