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[187520_at]

Description T16H12.9 /REP_DB=WormBase Gene ID /WP=CE01670 /TR=SW:P34572 /GB=CAA87428.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 71      6grp_total > 41      4grp_total > 21      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 331.9
(1.3)
P 		230.2
(-0.6)
P 		105.5
(-3)
P 		421.7
(3)
P 		316
B 397
(2.3)
P 		151.9
(-2.7)
P 		134.6
(-3)
P 		433.4
(3)
P 		299
C 375.2
(1.9)
P 		180.4
(-2)
P 		133.4
(-3)
P 		429.9
(3)
P 		297
avr 368
(1.8) 		187.5
(-1.8) 		124.5
(-3) 		428.3
(3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 294.4
(-1)
P 		367.4
(0.3)
P 		523.8
(3)
P 		450.1
(1.7)
P 		278.4
(-1.2)
P 		175.9
(-3)
P 		348
B 341
(-1.6)
P 		397.9
(-0.5)
P 		563.2
(3)
P 		362.9
(-1.2)
P 		320.8
(-2.1)
P 		276.4
(-3)
P 		287
C 286.3
(-1.6)
P 		397.2
(1.4)
P 		457.3
(3)
P 		350.3
(0.1)
P 		236.1
(-3)
P 		309.9
(-1)
P 		221
avr 307.2
(-1.8) 		387.5
(0.1) 		514.8
(3) 		387.8
(0.1) 		278.4
(-2.4) 		254.1
(-3) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 120.8
(3)
P 		50
(-1.6)
P 		27.6
(-3)
P 		61.7
(-0.8)
P 		93
B 126.6
(3)
P 		37.5
(-2.6)
P 		31.2
(-3)
P 		92.4
(0.8)
P 		95
C 124.2
(3)
P 		51.9
(-2.6)
P 		46.5
(-3)
P 		72.5
(-1)
P 		78
avr 123.9
(3) 		46.5
(-2.2) 		35.1
(-3) 		75.5
(-0.3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 54.3
(-2.2)
P 		130.7
(3)
P 		114.1
(1.9)
P 		114.2
(1.9)
P 		84
(-0.2)
P 		42.8
(-3)
P 		88
B 118.7
(0.3)
P 		132.4
(2.4)
P 		136.8
(3)
P 		96.1
(-3)
P 		130.4
(2.1)
P 		103.1
(-2)
P 		41
C 106.1
(1.2)
P 		121.2
(3)
P 		116.4
(2.4)
P 		70.4
(-3)
P 		76.4
(-2.3)
P 		103.7
(0.9)
P 		51
avr 93
(-1.7) 		128.1
(3) 		122.4
(2.2) 		93.6
(-1.6) 		96.9
(-1.2) 		83.2
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6185
Sequence Type Exemplar sequence
Representative Public ID T16H12.9 NCBI
Target Description T16H12.9 /REP_DB=WormBase Gene ID /WP=CE01670 /TR=SW:P34572 /GB=CAA87428.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066843 NCBI Caenorhabditis elegans T16H12.9 (T16H12.9) mRNA, complete cds. 11/11 None
T16H12.9 ENSEMBL cdna:known chromosome:CEL140:III:10109311:10111954:1 gene:T16H12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013082 2/11 Cross Hyb Matching Probes None
SNAP00000013074 2/11 Cross Hyb Matching Probes None
SNAP00000023583 8/11 Cross Hyb Matching Probes None
GENEFINDER00000023596 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10109894-10111950(+) 88.33 88.33
Public Domain and Genome References
Gene Title
Ensembl T16H12.9
Entrez Gene 188562 Entrez gene
SwissProt P34572 EMBL-EBI
WormBase CE28843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83142 Hypothetical protein T16H12.9 [Caenorhabditis elegans] emb|CAA87428.2| Hypothetical protein T16H12.9 [Caenorhabditis elegans] ref|NP_499244.1| T16H12.9 [Caenorhabditis elegans] sp|P34572|YNV9_CAEEL Hypothetical protein T16H12.9 in chromosome III 1.0E-142
blast T27700 hypothetical protein T16H12.9 - Caenorhabditis elegans 1.0E-128
blast CAE65041 Hypothetical protein CBG09882 [Caenorhabditis briggsae] 1.0E-97
Sequence
Target Sequence 
>C. ELEGANS:187520_AT
aagcagctgcaaaaggtcggccttctcgcaaaagatatcaatgatattgttgcttctcaa
gttgattcaaattcaacttgcactaaatatggatttaccaggcagcagcaaaaaaaaagt
cacgacgatgacgatgatgatgacgattcagatagtgacgagtctaaagaagaggaagag
aagaagaaacgcgacagaaaacatagacgagacaaaagacaagcaattactcaaggatcc
caaaacaatacggacccgaacttgattggaactcgtttcacaatatcatgtgcaatgaaa
ggtgtatcagtggatccaactggaactgtgtctttgtgttcttcttgttgggtctggagg
caattgccgagcaattacaggcctcagtatattaatgaacttgtttgcgataacactgac
agcgattgtttgagtggttatgcaacttgctctgtaggccatcgaactttcgaagcaatc
agaaacgacaatggagttcaaacccagaagagctcatcactacaatcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAGCTGCAAAAGGTCGGCCTTC 147 151 379 Antisense
GTCGGCCTTCTCGCAAAAGATATCA 526 471 394 Antisense
GACAAGCAATTACTCAAGGATCCCA 267 365 596 Antisense
TACGGACCCGAACTTGATTGGAACT 222 365 627 Antisense
AACTGTGTCTTTGTGTTCTTCTTGT 517 143 702 Antisense
TGTTCTTCTTGTTGGGTCTGGAGGC 201 563 715 Antisense
ATTGCCGAGCAATTACAGGCCTCAG 515 5 741 Antisense
GTTTGCGATAACACTGACAGCGATT 164 451 781 Antisense
GGTTATGCAACTTGCTCTGTAGGCC 318 507 814 Antisense
CTCTGTAGGCCATCGAACTTTCGAA 157 231 828 Antisense
GAAGAGCTCATCACTACAATCACTA 310 339 885 Antisense
Sequence Source Affymetrix Proprietary Database