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[187516_at]

Description K06H7.2 /REP_DB=WormBase Gene ID /WP=CE00253 /TR=SW:P34510 /GB=AAF99987.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 42      6grp_total > 30      4grp_total > 22      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 982.2
(2.1)
P 		847.2
(0.6)
P 		528.1
(-3)
P 		1064.4
(3)
P 		536
B 1190.4
(3)
P 		557.6
(-2.7)
P 		525.4
(-3)
P 		1065.3
(1.9)
P 		665
C 1167.3
(3)
P 		596.6
(-3)
P 		647.6
(-2.5)
P 		1085.8
(2.1)
P 		571
avr 1113.3
(3) 		667.1
(-1.9) 		567
(-3) 		1071.8
(2.5) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 921.3
(0.7)
P 		1046.3
(1.6)
P 		1257.9
(3)
P 		1132
(2.1)
P 		701.6
(-0.8)
P 		369.9
(-3)
P 		888
B 875.2
(-0)
P 		1228.5
(3)
P 		1019.5
(1.2)
P 		1076.1
(1.7)
P 		813
(-0.6)
P 		527.2
(-3)
P 		701
C 936.1
(0.4)
P 		1126.4
(2.1)
P 		918.5
(0.2)
P 		1219.7
(3)
P 		706.7
(-1.8)
P 		574.8
(-3)
P 		645
avr 910.9
(0.9) 		1133.7
(2.9) 		1065.3
(2.3) 		1142.6
(3) 		740.4
(-0.7) 		490.6
(-3) 		652
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 357.6
(3)
P 		183.9
(-1.7)
P 		138.1
(-3)
P 		155.8
(-2.5)
P 		220
B 379.6
(3)
P 		137.7
(-2.6)
P 		121.7
(-3)
P 		227
(-0.6)
P 		258
C 386.4
(3)
P 		171.5
(-3)
P 		225.7
(-1.5)
P 		183.1
(-2.7)
P 		215
avr 374.5
(3) 		164.4
(-2.9) 		161.8
(-3) 		188.6
(-2.2) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 169.8
(-1.3)
P 		372.1
(3)
P 		273.9
(0.9)
P 		287.1
(1.2)
P 		211.7
(-0.4)
P 		90.1
(-3)
P 		282
B 304.5
(0)
P 		408.9
(3)
P 		247.6
(-1.6)
P 		285
(-0.5)
P 		330.3
(0.8)
P 		196.6
(-3)
P 		212
C 347
(3)
P 		343.7
(2.9)
P 		233.8
(-1.4)
P 		245.3
(-0.9)
P 		228.7
(-1.6)
P 		192.4
(-3)
P 		155
avr 273.8
(0.2) 		374.9
(3) 		251.8
(-0.4) 		272.5
(0.1) 		256.9
(-0.3) 		159.7
(-3) 		215
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6944
Sequence Type Exemplar sequence
Representative Public ID K06H7.2 NCBI
Target Description K06H7.2 /REP_DB=WormBase Gene ID /WP=CE00253 /TR=SW:P34510 /GB=AAF99987.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066366 NCBI Caenorhabditis elegans K06H7.2 (K06H7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000036741 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8093506:8096089:1 11/11 None
K06H7.2 ENSEMBL cdna:known chromosome:CEL140:III:8093506:8096089:1 gene:K06H7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036734 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8093503-8096087(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H7.2
Entrez Gene 187077 Entrez gene
SwissProt P34510 EMBL-EBI
WormBase CE00253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99987 Hypothetical protein K06H7.2 [Caenorhabditis elegans] ref|NP_498767.1| K06H7.2 [Caenorhabditis elegans] sp|P34510|YMX2_CAEEL Hypothetical protein K06H7.2 in chromosome III 0.0
blast NP_504640 T05H4.15a [Caenorhabditis elegans] gb|AAB66020.1| Hypothetical protein T05H4.15a [Caenorhabditis elegans] 1.0E-81
blast NP_504159 Y45G5AM.3 [Caenorhabditis elegans] gb|AAG23365.1| Hypothetical protein Y45G5AM.3 [Caenorhabditis elegans] 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.6E-7
Sequence
Target Sequence 
>C. ELEGANS:187516_AT
tgccacatcacatgcatgacttacatatttcaccagcaacatttagagaacataatgaag
tcacactgtcaccagatatactcacactaccacagataaccaactgcgagaaattgtacc
tttaccacaaaaccaatatctcgaatgagcaattttttgaattaaaagcaaagaaatgta
gtttcaattcttcaaatataacggatgaagcaatcaacaaatttataaagaattggataa
acgggaaatctgtggaagggtttaaagaagcgtttttatggcaaaggtctacttcaaata
cagaagaaattacaaaaggaattgaaatcagaccatggaatgaacaatttcaaagagaaa
atgcaaaattctggtcggatttctctgaatattgttatagtggaagatgttatcaaatat
caagtaatattaatccatacaatagtatgactcttaatttcatcaataactgcgtttcga
ttcatgtcactggattggcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCACATCACATGCATGACTTACA 624 585 656 Antisense
GCATGACTTACATATTTCACCAGCA 52 311 669 Antisense
TAATGAAGTCACACTGTCACCAGAT 255 637 708 Antisense
GTCACCAGATATACTCACACTACCA 599 465 723 Antisense
CTCACACTACCACAGATAACCAACT 31 229 736 Antisense
TGCGAGAAATTGTACCTTTACCACA 643 583 760 Antisense
TTTACCACAAAACCAATATCTCGAA 282 673 776 Antisense
GAAGCGTTTTTATGGCAAAGGTCTA 326 341 922 Antisense
GCAAAATTCTGGTCGGATTTCTCTG 235 319 1018 Antisense
AACTGCGTTTCGATTCATGTCACTG 592 141 1123 Antisense
GATTCATGTCACTGGATTGGCAAAG 342 431 1134 Antisense
Sequence Source Affymetrix Proprietary Database