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[187515_at]

Description B0304.2 /REP_DB=WormBase Gene ID /WP=CE02424 /TR=SW:Q10932 /GB=AAK31392.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 130.9
(-2.5)
M 		119.7
(-3)
M 		182.7
(-0.3)
P 		258.1
(3)
A 		138
B 91.3
(-3)
A 		95.1
(-2.8)
A 		116.8
(-1.7)
A 		213.6
(3)
P 		122
C 99.2
(-3)
A 		122.1
(-2.2)
A 		126.4
(-2.1)
P 		274.7
(3)
P 		176
avr 107.1
(-3) 		112.3
(-2.8) 		142
(-1.5) 		248.8
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 68.9
(-3)
A 		66.4
(-3)
A 		109.1
(-2.5)
P 		192
(-1.4)
P 		444.9
(1.9)
P 		533.4
(3)
P 		467
B 56.5
(-3)
A 		82.3
(-2.7)
A 		109.9
(-2.3)
A 		189.2
(-1.3)
P 		384.5
(1.3)
P 		515.4
(3)
P 		459
C 34.4
(-3)
A 		113.3
(-2.1)
M 		126.2
(-1.9)
P 		212.9
(-0.9)
A 		398.5
(1.4)
P 		535
(3)
P 		501
avr 53.3
(-3) 		87.3
(-2.6) 		115.1
(-2.2) 		198
(-1.2) 		409.3
(1.5) 		527.9
(3) 		475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 47.7
(3)
M 		26
(-3)
M 		47.7
(3)
P 		37.8
(0.3)
A 		22
B 29.1
(-1.5)
A 		23.5
(-3)
A 		27.1
(-2)
A 		45.5
(3)
P 		22
C 32.8
(-3)
A 		35.1
(-2)
A 		44
(2)
P 		46.3
(3)
P 		14
avr 36.5
(0.3) 		28.2
(-3) 		39.6
(1.6) 		43.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 12.7
(-3)
A 		23.6
(-2.5)
A 		23.8
(-2.5)
P 		48.7
(-1.2)
P 		134.2
(3)
P 		129.9
(2.8)
P 		122
B 19.6
(-3)
A 		27.4
(-2.7)
A 		26.7
(-2.8)
A 		50.1
(-1.9)
P 		156.2
(1.7)
P 		192.2
(3)
P 		173
C 12.7
(-3)
A 		34.6
(-2.2)
M 		32.1
(-2.3)
P 		42.8
(-1.9)
A 		128.9
(1.2)
P 		179.1
(3)
P 		166
avr 15
(-3) 		28.5
(-2.5) 		27.5
(-2.5) 		47.2
(-1.7) 		139.8
(1.9) 		167.1
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5748
Sequence Type Exemplar sequence
Representative Public ID B0304.2 NCBI
Target Description B0304.2 /REP_DB=WormBase Gene ID /WP=CE02424 /TR=SW:Q10932 /GB=AAK31392.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062399 NCBI Caenorhabditis elegans B0304.2 (B0304.2) mRNA, complete cds. 11/11 None
SNAP00000018305 ENSEMBL cdna:SNAP chromosome:CEL140:II:4523631:4524440:1 11/11 None
GENEFINDER00000018316 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4523631:4524440:1 11/11 None
B0304.2 ENSEMBL cdna:known chromosome:CEL140:II:4523631:4524513:1 gene:B0304.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4523629-4524439(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0304.2
Entrez Gene 173789 Entrez gene
SwissProt Q10932 EMBL-EBI
WormBase CE02424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31392 Hypothetical protein B0304.2 [Caenorhabditis elegans] ref|NP_494800.1| B0304.2 [Caenorhabditis elegans] sp|Q10932|YT22_CAEEL Hypothetical protein B0304.2 in chromosome II 1.0E-118
blast CAE67875 Hypothetical protein CBG13468 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Database ID Description E-Value
scop a.4.5.CAP C-terminal domain-like All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; CAP C-terminal domain-like 5.5
Sequence
Target Sequence 
>C. ELEGANS:187515_AT
aacacgtcggcttccagtgagtttggaagtctcgaagactcgcaccaatttgtgagccca
gtcaccagacacgcgtcgaaaagaagagccgttgaaaatgtggatcacttggacgagttg
atgaaatcatcgatggttttgtcgccagaaaagcgactccgtttgaatacatcaaacgac
tcgaatcttgtgagaaacacggctagatcgcctgattcttctatgaatggaaggcctcaa
acaagacgatcgacctccagtgacattgaaatttctccacgtgttcgcgcaatgcgctcg
acttccggaagctcaatggatcttgtcagaaccgtctcctcgttctgcaccgattccatt
tccccgaaattcttcacaaatcacggatcgacgacaagaaaacgcacagagaatggatca
atttattcaagacaccgtctcggagccacattttctccattggttgccggcgcgaaaaga
aagatggcaacgccatcgcaaagtcttaaaagacaagagaaacaatcgccattggaatcg
agacacggcggacttcgcagccgaggcactccacagaggaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACGTCGGCTTCCAGTGAGTTTG 288 133 52 Antisense
GACTCGCACCAATTTGTGAGCCCAG 219 373 88 Antisense
ACACGGCTAGATCGCCTGATTCTTC 600 109 248 Antisense
CAAACAAGACGATCGACCTCCAGTG 377 191 289 Antisense
CATTGAAATTTCTCCACGTGTTCGC 249 215 315 Antisense
ACGTGTTCGCGCAATGCGCTCGACT 457 95 330 Antisense
ATGGATCTTGTCAGAACCGTCTCCT 465 51 367 Antisense
GAGCCACATTTTCTCCATTGGTTGC 623 383 494 Antisense
TGGCAACGCCATCGCAAAGTCTTAA 478 545 536 Antisense
AATCGAGACACGGCGGACTTCGCAG 224 169 587 Antisense
AGCCGAGGCACTCCACAGAGGAAAC 285 83 610 Antisense
Sequence Source Affymetrix Proprietary Database