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[187514_at]

Description F52C9.5 /REP_DB=WormBase Gene ID /WP=CE01963 /TR=SW:Q10125 /GB=AAA81055.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 35.8
(-3)
A 		84.3
(3)
A 		80.2
(2.5)
A 		44.6
(-1.9)
A 		49
B 57.3
(-1.4)
A 		53.7
(-3)
A 		62.3
(0.8)
A 		67.3
(3)
A 		14
C 32.2
(-3)
A 		63.6
(2.6)
A 		61.5
(2.3)
A 		65.6
(3)
A 		33
avr 41.8
(-3) 		67.2
(2.8) 		68
(3) 		59.2
(1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 43
(-1.6)
A 		27.2
(-3)
A 		74.2
(1.1)
P 		96.2
(3)
A 		47.9
(-1.2)
A 		28.9
(-2.9)
A 		69
B 44.7
(-2.5)
A 		53.2
(-0.8)
A 		42.2
(-3)
A 		71.7
(3)
A 		51.1
(-1.2)
P 		49.9
(-1.4)
A 		30
C 27.8
(-3)
A 		89.9
(3)
A 		41
(-1.7)
A 		83.9
(2.4)
A 		60.9
(0.2)
P 		37
(-2.1)
A 		62
avr 38.5
(-3) 		56.8
(-0.6) 		52.5
(-1.1) 		83.9
(3) 		53.3
(-1) 		38.6
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13
(-0.3)
A 		18.3
(1.9)
A 		21
(3)
A 		6.5
(-3)
A 		15
B 18.3
(3)
A 		13.3
(-3)
A 		14.4
(-1.7)
A 		14.3
(-1.8)
A 		5
C 10.7
(-3)
A 		18.3
(1.3)
A 		21.4
(3)
A 		11.1
(-2.8)
A 		11
avr 14
(-0.5) 		16.6
(1.3) 		18.9
(3) 		10.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.9
(-2.7)
A 		9.7
(-2.1)
A 		16.2
(0.2)
P 		24.4
(3)
A 		14.5
(-0.4)
A 		7
(-3)
A 		17
B 15.6
(0.1)
A 		17.7
(1.2)
A 		10.2
(-3)
A 		19
(2)
A 		20.8
(3)
P 		18.6
(1.8)
A 		11
C 10.3
(-3)
A 		27.4
(3)
A 		10.4
(-3)
A 		16.9
(-0.7)
A 		19.7
(0.3)
P 		12.4
(-2.3)
A 		17
avr 11.3
(-3) 		18.3
(1.8) 		12.3
(-2.3) 		20.1
(3) 		18.3
(1.8) 		12.7
(-2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6109
Sequence Type Exemplar sequence
Representative Public ID F52C9.5 NCBI
Target Description F52C9.5 /REP_DB=WormBase Gene ID /WP=CE01963 /TR=SW:Q10125 /GB=AAA81055.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065732 NCBI Caenorhabditis elegans F52C9.5 (F52C9.5) mRNA, complete cds. 11/11 None
SNAP00000014749 ENSEMBL cdna:SNAP chromosome:CEL140:III:5302175:5306192:1 10/11 None
F52C9.5 ENSEMBL cdna:known chromosome:CEL140:III:5302175:5306281:1 gene:F52C9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014761 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5302173-5306191(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C9.5
Entrez Gene 186097 Entrez gene
WormBase CE38962 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498133 F52C9.5 [Caenorhabditis elegans] sp|Q10125|YSM5_CAEEL Hypothetical protein F52C9.5 precursor 0.0
blast AAA81055 Hypothetical protein F52C9.5 [Caenorhabditis elegans] 0.0
blast CAE73693 Hypothetical protein CBG21204 [Caenorhabditis briggsae] 0.0
blast CAE73693 Hypothetical protein CBG21204 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 3.8E-6
Pfam IPR003014 EMBL-EBI N/apple PAN 4.1E-7
Pfam IPR003014 EMBL-EBI N/apple PAN 2.0E-12
Pfam IPR003014 EMBL-EBI N/apple PAN 2.3E-9
Pfam IPR003014 EMBL-EBI N/apple PAN 4.2E-16
Sequence
Target Sequence 
>C. ELEGANS:187514_AT
gaaatctccttacagatcatgcccatccacattcttctctcgtcatcctcaaatgattct
tgttggatttgcagaatcagtttcagattctccatcttttgaacattgctttgacacgtg
tcttaataaaactgatgcgattggagctgataaaatggtgacagaccacgaagatgtaga
ggaggatggttcaaaatgggaaagttggtctgaatgtcaagatggaaaacagacaagacg
aaagatttgtgctaattttaatcaaatcgaagactgcgccgaagaagttcgagattgtgt
tgacgaaattgattcaactgacatgagaatgtcaattaaaagagctggagaattagaaaa
taatgatcacgaacaaattgaagataataatactgatgcgtctgaagacccagtgcccac
aaaagaagaaatcgcagaagtgaagcaaaagatacgtcgaactggcttcaaatgcccatt
aaatgagtgctgtcgtgtattcctttcgtgctcctatggtctccgtcataattcgcatac
aaaacagttggaatggtgcagaaggccatgtgatccaagtttgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCTCCTTACAGATCATGCCCA 168 363 894 Antisense
CTTCTCTCGTCATCCTCAAATGATT 319 221 927 Antisense
AATCAGTTTCAGATTCTCCATCTTT 440 171 968 Antisense
GATTCTCCATCTTTTGAACATTGCT 154 433 979 Antisense
GAACATTGCTTTGACACGTGTCTTA 487 351 994 Antisense
ATCGAAGACTGCGCCGAAGAAGTTC 532 33 1159 Antisense
TGATGCGTCTGAAGACCCAGTGCCC 463 565 1287 Antisense
GTCGAACTGGCTTCAAATGCCCATT 155 475 1349 Antisense
AATGAGTGCTGTCGTGTATTCCTTT 385 165 1375 Antisense
GGTCTCCGTCATAATTCGCATACAA 100 503 1411 Antisense
AAGGCCATGTGATCCAAGTTTGAGC 46 163 1455 Antisense
Sequence Source Affymetrix Proprietary Database