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[187512_at]

Description B0416.3 /REP_DB=WormBase Gene ID /WP=CE02433 /TR=SW:Q11071 /GB=AAG38880.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 75.4
(-1.6)
P 		17.5
(-3)
A 		25.7
(-2.8)
A 		262.9
(3)
P 		245
B 56.5
(-2.4)
P 		41.3
(-2.7)
A 		29.5
(-3)
A 		297.7
(3)
P 		268
C 60.9
(-2)
A 		52.9
(-2.2)
A 		14.8
(-3)
A 		293.4
(3)
P 		279
avr 64.3
(-2.1) 		37.2
(-2.7) 		23.3
(-3) 		284.7
(3) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 99.9
(1.3)
A 		74.9
(0.1)
P 		41
(-1.5)
A 		9.5
(-3)
A 		112.8
(1.9)
P 		135.8
(3)
P 		126
B 86.7
(-0.7)
P 		55.8
(-2.4)
A 		44.5
(-3)
A 		62.8
(-2)
A 		117.4
(1)
P 		153.4
(3)
P 		109
C 89.3
(-0.1)
P 		88.6
(-0.1)
P 		33.2
(-2.7)
A 		25.6
(-3)
A 		67.6
(-1.1)
P 		158.2
(3)
P 		133
avr 92
(0.1) 		73.1
(-0.9) 		39.6
(-2.6) 		32.6
(-3) 		99.3
(0.4) 		149.1
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 27.5
(1.1)
P 		3.8
(-3)
A 		6.7
(-2.5)
A 		38.5
(3)
P 		35
B 18
(-1.8)
P 		10.2
(-2.6)
A 		6.8
(-3)
A 		63.4
(3)
P 		57
C 20.2
(-1)
A 		15.2
(-1.6)
A 		5.2
(-3)
A 		49.5
(3)
P 		44
avr 21.9
(-0.9) 		9.7
(-2.5) 		6.2
(-3) 		50.5
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 18.4
(0)
A 		26.6
(1.6)
P 		8.9
(-1.8)
A 		2.4
(-3)
A 		34
(3)
P 		33.1
(2.8)
P 		32
B 30.2
(-0.5)
P 		18.6
(-2)
A 		10.8
(-3)
A 		16.6
(-2.3)
A 		47.7
(1.8)
P 		57.2
(3)
P 		46
C 33.1
(0.5)
P 		27
(-0.3)
P 		8.4
(-2.6)
A 		5.2
(-3)
A 		21.9
(-0.9)
P 		53
(3)
P 		48
avr 27.2
(-0.1) 		24.1
(-0.6) 		9.4
(-2.8) 		8.1
(-3) 		34.5
(1) 		47.8
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17248
Sequence Type Exemplar sequence
Representative Public ID B0416.3 NCBI
Target Description B0416.3 /REP_DB=WormBase Gene ID /WP=CE02433 /TR=SW:Q11071 /GB=AAG38880.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077164 NCBI Caenorhabditis elegans B0416.3 (B0416.3) mRNA, complete cds. 11/11 None
GENEFINDER00000036834 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9291268:9293296:1 11/11 None
B0416.3 ENSEMBL cdna:known chromosome:CEL140:X:9291581:9293296:1 gene:B0416.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9291641-9293296(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0416.3
Entrez Gene 181159 Entrez gene
SwissProt Q11071 EMBL-EBI
WormBase CE02433 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38880 Hypothetical protein B0416.3 [Caenorhabditis elegans] ref|NP_509565.1| B0416.3 [Caenorhabditis elegans] sp|Q11071|YT43_CAEEL Hypothetical protein B0416.3 in chromosome X 1.0E-96
blast CAE69843 Hypothetical protein CBG16169 [Caenorhabditis briggsae] 3.0E-96
blast AAG38880 Hypothetical protein B0416.3 [Caenorhabditis elegans] ref|NP_509565.1| B0416.3 [Caenorhabditis elegans] sp|Q11071|YT43_CAEEL Hypothetical protein B0416.3 in chromosome X 5.0E-94
blast CAE69843 Hypothetical protein CBG16169 [Caenorhabditis briggsae] 4.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509565.1 4 56-78,83-105,117-139,169-191
B0416.3 4 56-78,83-105,117-139,169-191
GENEFINDER00000036834 4 97-119,129-151,158-180,200-222
Sequence
Target Sequence 
>C. ELEGANS:187512_AT
gtacacggtcttggctatgatccattttcatattgtggacgaagggttcatgttttgcta
ctcaccaagttgattagcgtgttgacgatacccttctatgtcgccatcatcatcttcatc
tctttttttgggaacgcaacttcggtgatgttttctgtgattattctagggtccgtatta
atttcaacgtgttacggagcatttcgtggagctaaaatgtgccttataccatttgtgata
atacaacttgtatttttaatatacgacttaatattaattacaattctattactggctgta
gtgtttccgaagatgtttctgtcagcccttttaaggttgccacttgaggatatcccgttc
gggacggaccaagtactcctcggctgcagtcttcttttagctttgcttcttgccccttta
gtttggactact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACACGGTCTTGGCTATGATCCAT 13 461 124 Antisense
GAAGGGTTCATGTTTTGCTACTCAC 336 335 164 Antisense
TGTTGACGATACCCTTCTATGTCGC 576 563 203 Antisense
GGAACGCAACTTCGGTGATGTTTTC 664 529 254 Antisense
TCTGTGATTATTCTAGGGTCCGTAT 117 607 277 Antisense
ATTACTGGCTGTAGTGTTTCCGAAG 173 13 411 Antisense
TTCCGAAGATGTTTCTGTCAGCCCT 607 697 428 Antisense
GTCAGCCCTTTTAAGGTTGCCACTT 227 463 444 Antisense
GCCACTTGAGGATATCCCGTTCGGG 527 273 462 Antisense
GCTGCAGTCTTCTTTTAGCTTTGCT 505 297 506 Antisense
TCTTGCCCCTTTAGTTTGGACTACT 708 615 531 Antisense
Sequence Source Affymetrix Proprietary Database