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[187511_s_at]

Description B0495.8 /REP_DB=WormBase Gene ID /WP=CE01766 /TR=SW:Q09217 /GB=AAA62527.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 61      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 327.4
(1.5)
P 		354
(3)
P 		247.5
(-3)
P 		298.3
(-0.1)
P 		107
B 358.4
(0.8)
P 		363.5
(1)
P 		414.1
(3)
P 		265.4
(-3)
P 		149
C 422.1
(3)
P 		319.3
(-0.7)
P 		366.4
(1)
P 		256
(-3)
P 		166
avr 369.3
(3) 		345.6
(1.5) 		342.7
(1.3) 		273.2
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 347.9
(-1.9)
P 		468.5
(0.5)
P 		438.8
(-0.1)
P 		537.5
(1.9)
P 		294.8
(-3)
P 		591.4
(3)
P 		297
B 419
(0.5)
P 		322.1
(-2.5)
P 		305.9
(-3)
P 		405.3
(0.1)
P 		423.5
(0.6)
P 		499.3
(3)
P 		193
C 503.1
(-0.2)
P 		296.7
(-3)
P 		486.2
(-0.4)
P 		435.1
(-1.1)
P 		412.5
(-1.4)
P 		732.5
(3)
P 		436
avr 423.3
(-1.5) 		362.4
(-3) 		410.3
(-1.8) 		459.3
(-0.6) 		376.9
(-2.6) 		607.7
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 119.2
(3)
P 		76.8
(-0.4)
P 		64.7
(-1.3)
P 		43.7
(-3)
P 		76
B 114.3
(3)
P 		89.8
(0.5)
P 		96
(1.1)
P 		56.6
(-3)
P 		58
C 139.7
(3)
P 		91.8
(0)
P 		127.7
(2.3)
P 		43.2
(-3)
P 		97
avr 124.4
(3) 		86.1
(-0) 		96.1
(0.8) 		47.8
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 64.1
(-3)
P 		166.6
(3)
P 		95.6
(-1.2)
P 		136.3
(1.2)
P 		89
(-1.5)
P 		144
(1.7)
P 		103
B 145.8
(0.8)
P 		107.2
(-1.2)
P 		74.3
(-3)
P 		107.3
(-1.2)
P 		172
(2.2)
P 		186.2
(3)
P 		112
C 186.5
(0.8)
P 		90.5
(-2.9)
P 		123.7
(-1.6)
P 		87.5
(-3)
P 		133.5
(-1.2)
P 		245.2
(3)
P 		158
avr 132.1
(-0.8) 		121.4
(-1.5) 		97.9
(-3) 		110.4
(-2.2) 		131.5
(-0.9) 		191.8
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187511_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5392
Sequence Type Exemplar sequence
Representative Public ID B0495.8 NCBI
Target Description B0495.8 /REP_DB=WormBase Gene ID /WP=CE01766 /TR=SW:Q09217 /GB=AAA62527.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171022 NCBI Caenorhabditis elegans B0495.8a (B0495.8) mRNA, complete cds. 11/11 None
SNAP00000031533 ENSEMBL cdna:SNAP chromosome:CEL140:II:7705791:7707384:-1 11/11 None
GENEFINDER00000031545 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7705619:7707384:-1 11/11 None
B0495.8a ENSEMBL cdna:known chromosome:CEL140:II:7705515:7707396:-1 gene:B0495.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174246 2 1 NM_171022 187511_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7705615-7707381(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0495.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62527 Hypothetical protein B0495.8a [Caenorhabditis elegans] ref|NP_741025.1| B0495.8a [Caenorhabditis elegans] sp|Q09217|YP68_CAEEL Hypothetical protein B0495.8 in chromosome II 1.0E-142
blast CAE67478 Hypothetical protein CBG12982 [Caenorhabditis briggsae] 1.0E-137
blast XP_624373 PREDICTED: similar to ENSANGP00000018276 [Apis mellifera] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187511_S_AT
aaaacacaaacatcgcaagctgctgattcaaaagcaaagcaagtggcagaaattgaagaa
aaaattgcgaagaacgtcgatgatattgagaaacttggaaatgaaggaaagatagaagaa
tctatgaaactccataaatatgtcgaagaactgagagagaaaatacaggaaattgaggac
agtcaaacagaagtcaaaactgctggaccgggatcaaactccgccaaacttcgtgtctgt
gaagattgcggcgcacaactgaatatcacagatcacgaatcacgaattgccgatcattac
aacggaaaaatgcatattggaatggttgaaacgagagaaacctatcttaaaatgaaggaa
actatcgacgaacgtcgtaaagaacgtgaggaaaagctaggatcacagagaggatatcag
agaagagagtcgtatggcagacgcgatcgtggtggggatcgtggagaatacagaggagac
cgtgatcgtgatcgtcgtaaccgagacagaagccgttctcgcgatcgttcatacagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACACAAACATCGCAAGCTGCTG 683 129 346 Antisense
CTGCTGGACCGGGATCAAACTCCGC 379 237 545 Antisense
TCCGCCAAACTTCGTGTCTGTGAAG 540 595 565 Antisense
GATTGCGGCGCACAACTGAATATCA 20 435 589 Antisense
GAATCACGAATTGCCGATCATTACA 330 327 622 Antisense
GAGAGTCGTATGGCAGACGCGATCG 138 395 770 Antisense
GGCAGACGCGATCGTGGTGGGGATC 209 537 781 Antisense
CAGAGGAGACCGTGATCGTGATCGT 84 207 816 Antisense
GATCGTGATCGTCGTAACCGAGACA 500 417 829 Antisense
TCGTAACCGAGACAGAAGCCGTTCT 669 595 840 Antisense
GTTCTCGCGATCGTTCATACAGAAG 541 443 860 Antisense
Sequence Source Affymetrix Proprietary Database