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[187510_at]

Description B0563.3 /REP_DB=WormBase Gene ID /WP=CE02441 /TR=SW:Q11079 /GB=AAA68321.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 56      6grp_total > 91      4grp_total > 14      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 879
1 2 3 4 range
A 2553.4
(2.6)
P 		2078.1
(-3)
P 		2365.9
(0.4)
P 		2587.2
(3)
P 		509
B 2507.9
(1)
P 		2293.8
(-2.3)
P 		2249.8
(-3)
P 		2635.8
(3)
P 		386
C 2433.8
(2)
P 		1915.3
(-1.8)
P 		1757.1
(-3)
P 		2566.3
(3)
P 		809
avr 2498.4
(1.8) 		2095.7
(-3) 		2124.3
(-2.7) 		2596.4
(3) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 970
1 2 3 4 5 6 range
A 2036
(1)
P 		2048.6
(1.1)
P 		1433.7
(-3)
P 		2336.7
(3)
P 		2257.1
(2.5)
P 		2011.6
(0.8)
P 		903
B 1682.8
(-1.5)
P 		1791.9
(-0.7)
P 		1468.5
(-3)
P 		2190.3
(2.1)
P 		2321.9
(3)
P 		1743.3
(-1.1)
P 		853
C 2106.4
(0.9)
P 		1541.8
(-3)
P 		2313.5
(2.4)
P 		2147.3
(1.2)
P 		2403.7
(3)
P 		1840.5
(-0.9)
P 		862
avr 1941.7
(-0.9) 		1794.1
(-2.4) 		1738.6
(-3) 		2224.8
(2) 		2327.6
(3) 		1865.1
(-1.7) 		589
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 551
1 2 3 4 range
A 929.7
(3)
P 		451.1
(-2.2)
P 		618.5
(-0.4)
P 		378.7
(-3)
P 		551
B 799.8
(3)
P 		566.5
(-2)
P 		521.3
(-3)
P 		561.7
(-2.1)
P 		279
C 805.7
(3)
P 		550.7
(-1.1)
P 		612.4
(-0.1)
P 		432.7
(-3)
P 		373
avr 845.1
(3) 		522.8
(-2) 		584.1
(-1) 		457.7
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 375.3
(-2.1)
P 		728.6
(3)
P 		312.2
(-3)
P 		592.6
(1)
P 		681.1
(2.3)
P 		489.8
(-0.4)
P 		416
B 585.5
(-0.7)
P 		596.4
(-0.5)
P 		356.6
(-3)
P 		580.1
(-0.7)
P 		943.4
(3)
P 		650.1
(0)
P 		587
C 780.7
(3)
P 		470.4
(-2.3)
P 		588.8
(-0.3)
P 		431.8
(-3)
P 		777.8
(3)
P 		616.1
(0.2)
P 		349
avr 580.5
(-0.5) 		598.5
(-0.2) 		419.2
(-3) 		534.8
(-1.2) 		800.8
(3) 		585.3
(-0.4) 		382
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16946
Sequence Type Exemplar sequence
Representative Public ID B0563.3 NCBI
Target Description B0563.3 /REP_DB=WormBase Gene ID /WP=CE02441 /TR=SW:Q11079 /GB=AAA68321.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077142(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077142 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-132) (tag-132) mRNA, complete cds. 10/11 A 
SNAP00000037333 ENSEMBL cdna:SNAP chromosome:CEL140:X:9158436:9160349:1 10/11 None
GENEFINDER00000037341 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9158605:9160349:1 11/11 None
B0563.4 ENSEMBL cdna:known chromosome:CEL140:X:9150627:9160579:1 gene:B0563.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9157070-9160348(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-132
Ensembl B0563.4
Entrez Gene 181150 Entrez gene
SwissProt Q11080 EMBL-EBI
WormBase CE30843 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245289_AT expressed protein at
CANINE_2:CFA.1524.1.A1_AT similar to Z-protein (S1R protein) cfa
CANINE_2:CFA.1524.1.A1_S_AT similar to Z-protein (S1R protein) cfa
CANINE_2:CFAAFFX.1506.1.S1_S_AT similar to Z-protein (S1R protein) cfa
CHICKEN:GGA.7538.1.S1_AT similar to Z-protein (0610007H07Rik) gga
HG-U133B:222845_X_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U133_PLUS_2:222845_X_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U133_PLUS_2:219206_X_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U133A:219206_X_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U133A_2:219206_X_AT transmembrane BAX inhibitor motif containing 4 hs
HU35KSUBA:RC_AA610052_AT transmembrane BAX inhibitor motif containing 4 hs
HU35KSUBC:RC_R40381_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U133B:223892_S_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U133_PLUS_2:223892_S_AT transmembrane BAX inhibitor motif containing 4 hs
U133_X3P:G10197627_3P_A_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U95C:48670_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U95E:73748_AT transmembrane BAX inhibitor motif containing 4 hs
HG-U95D:77967_AT transmembrane BAX inhibitor motif containing 4 hs
HU35KSUBA:AA383520_AT Transmembrane BAX inhibitor motif containing 4 hs
HU35KSUBD:RC_AA489218_AT Transmembrane BAX inhibitor motif containing 4 hs
HG-U133_PLUS_2:1563222_AT Transmembrane BAX inhibitor motif containing 4 hs
HG-U133_PLUS_2:244639_AT Transmembrane BAX inhibitor motif containing 4 hs
HG-U133B:244639_AT Transmembrane BAX inhibitor motif containing 4 hs
HG-U95C:64561_AT Transmembrane BAX inhibitor motif containing 4 hs
HG-U95C:64990_R_AT Transmembrane BAX inhibitor motif containing 4 hs
HU35KSUBA:RC_AA018414_AT Transmembrane BAX inhibitor motif containing 4 hs
HU35KSUBC:RC_H78365_AT Transmembrane BAX inhibitor motif containing 4 hs
U133_X3P:HS.213040.0.A1_3P_AT Transmembrane BAX inhibitor motif containing 4 hs
MG-U74BV2:162771_AT transmembrane BAX inhibitor motif containing 4 mm
MOE430A:1428050_A_AT transmembrane BAX inhibitor motif containing 4 mm
MOUSE430A_2:1428050_A_AT transmembrane BAX inhibitor motif containing 4 mm
MOUSE430_2:1428050_A_AT transmembrane BAX inhibitor motif containing 4 mm
MOE430B:1443917_AT transmembrane BAX inhibitor motif containing 4 mm
MOUSE430_2:1443917_AT transmembrane BAX inhibitor motif containing 4 mm
MU19KSUBA:TC19865_AT Transmembrane BAX inhibitor motif containing 4 (Tmbim4), mRNA mm
MU19KSUBA:TC19865_G_AT Transmembrane BAX inhibitor motif containing 4 (Tmbim4), mRNA mm
MU19KSUBC:TC37310_AT Transmembrane BAX inhibitor motif containing 4 (Tmbim4), mRNA mm
RG-U34B:RC_AI013781_AT CGI-119 protein rn
RG-U34C:RC_AI175131_S_AT CGI-119 protein rn
RAE230A:1371968_AT CGI-119 protein rn
RAT230_2:1371968_AT CGI-119 protein rn
RG-U34B:RC_AA957945_AT CGI-119 protein rn
Protein Similarities
Method ID Description E-Value
blast AAA68319 Temporarily assigned gene name protein 132 [Caenorhabditis elegans] ref|NP_509543.2| Temporarily Assigned Gene name family member (tag-132) [Caenorhabditis elegans] sp|Q11080|YT64_CAEEL Hypothetical protein B0563.4 in chromosome X 1.0E-147
blast AAA68319 Temporarily assigned gene name protein 132 [Caenorhabditis elegans] ref|NP_509543.2| Temporarily Assigned Gene name family member (tag-132) [Caenorhabditis elegans] sp|Q11080|YT64_CAEEL Hypothetical protein B0563.4 in chromosome X 4.0E-90
blast AAA68319 Temporarily assigned gene name protein 132 [Caenorhabditis elegans] ref|NP_509543.2| Temporarily Assigned Gene name family member (tag-132) [Caenorhabditis elegans] sp|Q11080|YT64_CAEEL Hypothetical protein B0563.4 in chromosome X 3.0E-89
blast AAI05248 Hypothetical protein LOC513242 [Bos taurus] ref|NP_001014914.1| hypothetical protein LOC513242 [Bos taurus] gb|AAX46353.1| CGI-119 protein [Bos taurus] 1.0E-36
blast AAH60596 Hypothetical protein LOC362884 [Rattus norvegicus] ref|NP_954547.1| hypothetical protein LOC362884 [Rattus norvegicus] 1.0E-36
blast NP_001004879 MGC88883 protein [Xenopus tropicalis] gb|AAH75267.1| MGC88883 protein [Xenopus tropicalis] 8.0E-32
blast NP_001004879 MGC88883 protein [Xenopus tropicalis] gb|AAH75267.1| MGC88883 protein [Xenopus tropicalis] 9.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR006214 EMBL-EBI Protein of unknown function UPF0005 3.3E-25
Pfam IPR006214 EMBL-EBI Protein of unknown function UPF0005 3.0E-25
Pfam IPR006214 EMBL-EBI Protein of unknown function UPF0005 3.0E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509543.2 6 77-99,109-129,136-158,163-182,189-211,216-235
B0563.4 6 77-99,109-129,136-158,163-182,189-211,216-235
SNAP00000037333 5 10-30,37-59,64-83,90-112,117-136
GENEFINDER00000037341 5 4-23,30-52,56-75,82-104,109-128
Sequence
Target Sequence 
>C. ELEGANS:187510_AT
aatcttctcggttcaattgctctgattattgcgctccacgtctacgccagagaagtccct
ctcaattatgttcttttggccgcattcaccgctgttcaagctgtcactatgggatgttaa
ctctcttcgaagcaaaggtggttcttgaagcagcagtcatcacaggacttgtagttgcgt
ctctctttgcttacaccctacagaacaaaagagacttttcagtgggatatgccagtatgg
gatcgctcttgtgcgttcttctctgggcaggcatattccagatgttcttcatgtctccag
ccgtcaatttcgttatcaacgtattcggagccggcttgttctgtgttctcctggtcatcg
accttgacatgattatgtacagattcagcccagaagactacatctgcgcttgtgtctctc
tctacatggacatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTCTCGGTTCAATTGCTCTGA 36 171 83 Antisense
GAAGTCCCTCTCAATTATGTTCTTT 6 337 134 Antisense
TTCACCGCTGTTCAAGCTGTCACTA 533 687 167 Antisense
TGGGATGTTAACTCTCTTCGAAGCA 202 551 192 Antisense
CAGGACTTGTAGTTGCGTCTCTCTT 474 209 245 Antisense
GTATGGGATCGCTCTTGTGCGTTCT 442 455 317 Antisense
ATTCCAGATGTTCTTCATGTCTCCA 126 9 357 Antisense
TCTCCAGCCGTCAATTTCGTTATCA 314 609 376 Antisense
TTCTCCTGGTCATCGACCTTGACAT 648 691 428 Antisense
AGACTACATCTGCGCTTGTGTCTCT 624 69 477 Antisense
GTGTCTCTCTCTACATGGACATCCT 90 487 494 Antisense
Sequence Source Affymetrix Proprietary Database