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[187509_at]

Description B0280.7 /REP_DB=WormBase Gene ID /WP=CE00814 /TR=SW:P41998 /GB=AAA19085.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      6grp_total > 84      4grp_total > 49      6grp_high1_sub > 04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 824
1 2 3 4 range
A 29.5
(-3)
A 		601
(1.9)
P 		723.6
(3)
P 		64.5
(-2.7)
P 		694
B 50.6
(-2.7)
A 		739.8
(2.3)
P 		832.9
(3)
P 		9.4
(-3)
A 		824
C 16.9
(-3)
A 		633
(1.9)
P 		766.9
(3)
P 		100.4
(-2.3)
P 		750
avr 32.3
(-3) 		657.9
(2.1) 		774.5
(3) 		58.1
(-2.8) 		742

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 835
1 2 3 4 5 6 range
A 22.8
(-3)
A 		528.8
(0.6)
P 		403.7
(-0.3)
P 		702.8
(1.9)
P 		857.9
(3)
P 		575.8
(1)
P 		835
B 68.4
(-3)
P 		490.3
(0.3)
P 		523.3
(0.6)
P 		607.1
(1.3)
P 		824.7
(3)
P 		604.5
(1.3)
P 		756
C 58.7
(-3)
A 		561.3
(2.1)
P 		430.8
(0.8)
P 		636.3
(2.9)
P 		650.9
(3)
P 		613.7
(2.6)
P 		592
avr 50
(-3) 		526.8
(0.9) 		452.6
(0.3) 		648.7
(1.9) 		777.8
(3) 		598
(1.5) 		728
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 10.7
(-3)
A 		130.5
(1)
P 		189.2
(3)
P 		9.4
(-3)
P 		180
B 16.1
(-2.6)
A 		182.7
(2.7)
P 		193
(3)
P 		2
(-3)
A 		191
C 5.6
(-3)
A 		182
(1)
P 		267.3
(3)
P 		16.9
(-2.7)
P 		262
avr 10.8
(-3) 		165.1
(1.5) 		216.5
(3) 		9.4
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 4.2
(-3)
A 		188.1
(1.3)
P 		87.9
(-1)
P 		178.3
(1.1)
P 		258.9
(3)
P 		140.2
(0.2)
P 		255
B 23.8
(-3)
P 		163.2
(-0.3)
P 		127.1
(-1)
P 		160.8
(-0.4)
P 		335.1
(3)
P 		225.4
(0.9)
P 		311
C 21.8
(-3)
A 		171.3
(1.8)
P 		109.6
(-0.2)
P 		128
(0.4)
P 		210.6
(3)
P 		205.5
(2.8)
P 		189
avr 16.6
(-3) 		174.2
(0.8) 		108.2
(-0.8) 		155.7
(0.3) 		268.2
(3) 		190.4
(1.1) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6750
Sequence Type Exemplar sequence
Representative Public ID B0280.7 NCBI
Target Description B0280.7 /REP_DB=WormBase Gene ID /WP=CE00814 /TR=SW:P41998 /GB=AAA19085.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066152 NCBI Caenorhabditis elegans B0280.7 (B0280.7) mRNA, complete cds. 11/11 None
SNAP00000041608 ENSEMBL cdna:SNAP chromosome:CEL140:III:7110312:7111765:-1 11/11 None
GENEFINDER00000041629 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7110312:7111765:-1 11/11 None
B0280.7 ENSEMBL cdna:known chromosome:CEL140:III:7110244:7111797:-1 gene:B0280.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7110309-7111763(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0280.7
Entrez Gene 175992 Entrez gene
SwissProt P41998 EMBL-EBI
WormBase CE29535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19085 Hypothetical protein B0280.7 [Caenorhabditis elegans] ref|NP_498553.1| B0280.7 [Caenorhabditis elegans] sp|P41998|YKC7_CAEEL Hypothetical protein B0280.7 in chromosome III 0.0
blast T15301 hypothetical protein B0280.7 - Caenorhabditis elegans 0.0
blast CAE70132 Hypothetical protein CBG16593 [Caenorhabditis briggsae] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:187509_AT
gagagagctgctggttgttatttcaatgagacgatctacccagaagaagagaaatgggtt
gaaccacaagtcaatccaaatgatacatcaattgatggacgtctcatgcaatgttttcgt
ccgcattacagttactatgaaagtcacgttgttggatgtgtgattggcaaactcggagtt
cttatcgatgaatttggacaacttctcgacggatcatatgtgaaatgtgtagagtcagag
tttggacatgtcagcctgaagtcagctaatgttgatgaattggcttgtacaatggacaac
aaaacatatgctcatgctagtcaatggactgatgtgaagaagggtgcaaatatgagatgt
aactatcgacatattgttaaggaatcatgcgtcctcggaactgaaattcttccaattggc
caagaagttccagtttcccgtgattgtatcttcctgtgtcatccacaaaccaatgtttac
atctgtgacaattctttagaagaattcaaaattgttgagagtaacggtgacgatctaggc
ccagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAGCTGCTGGTTGTTATTTCA 389 395 556 Antisense
TTCAATGAGACGATCTACCCAGAAG 217 685 577 Antisense
GATGGACGTCTCATGCAATGTTTTC 333 407 649 Antisense
GTTTTCGTCCGCATTACAGTTACTA 131 449 668 Antisense
TTTGGACAACTTCTCGACGGATCAT 133 657 748 Antisense
GGACATGTCAGCCTGAAGTCAGCTA 358 523 799 Antisense
TATGCTCATGCTAGTCAATGGACTG 615 657 862 Antisense
GAATCATGCGTCCTCGGAACTGAAA 17 329 937 Antisense
TCCAGTTTCCCGTGATTGTATCTTC 307 589 984 Antisense
GTATCTTCCTGTGTCATCCACAAAC 659 453 1001 Antisense
TAACGGTGACGATCTAGGCCCAGTC 166 635 1077 Antisense
Sequence Source Affymetrix Proprietary Database