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[187508_at]

Description K06H7.6 /REP_DB=WormBase Gene ID /WP=CE26943 /TR=SW:P34514 /GB=AAF99984.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_high_8_8 > 59      6grp_total > 75      4grp_total > 63      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 109.9
(-1.4)
P 		134.3
(2.8)
P 		135.4
(3)
M 		100.6
(-3)
P 		35
B 106.5
(3)
P 		57.9
(-2.6)
A 		94.2
(1.6)
P 		54
(-3)
P 		53
C 102.7
(1)
P 		51.7
(-3)
P 		127.9
(3)
P 		77
(-1)
P 		76
avr 106.4
(1.2) 		81.3
(-2.4) 		119.2
(3) 		77.2
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 49.6
(-3)
A 		130.4
(1.2)
P 		94.1
(-0.7)
P 		164.5
(3)
P 		121.7
(0.8)
P 		150.9
(2.3)
P 		115
B 81
(-1.7)
A 		71.3
(-2.4)
P 		110.7
(0.3)
P 		62.1
(-3)
P 		128.2
(1.4)
P 		151.6
(3)
P 		90
C 116.1
(-1.1)
P 		84.6
(-3)
P 		164.6
(1.7)
P 		143.4
(0.5)
P 		130.6
(-0.3)
P 		185.7
(3)
P 		101
avr 82.2
(-3) 		95.4
(-2) 		123.1
(0) 		123.3
(0.1) 		126.8
(0.3) 		162.7
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 40
(3)
P 		29.1
(0.4)
P 		35.4
(1.9)
M 		14.7
(-3)
P 		25
B 34
(3)
P 		14.3
(-2.3)
A 		21.8
(-0.3)
P 		11.5
(-3)
P 		23
C 34
(1)
P 		14.9
(-2.6)
P 		44.6
(3)
P 		13
(-3)
P 		32
avr 36
(3) 		19.4
(-1.3) 		33.9
(2.4) 		13.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 9.1
(-3)
A 		46.4
(3)
P 		20.5
(-1.2)
P 		41.7
(2.2)
P 		36.7
(1.4)
P 		36.7
(1.4)
P 		37
B 28.2
(-1.2)
A 		23.7
(-1.9)
P 		26.9
(-1.4)
P 		16.5
(-3)
P 		52.1
(2.3)
P 		56.5
(3)
P 		40
C 43
(-0.2)
P 		25.8
(-3)
P 		41.9
(-0.3)
P 		28.8
(-2.5)
P 		42.3
(-0.3)
P 		62.2
(3)
P 		36
avr 26.8
(-3) 		32
(-1.8) 		29.8
(-2.3) 		29
(-2.5) 		43.7
(1.1) 		51.8
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6429
Sequence Type Exemplar sequence
Representative Public ID K06H7.6 NCBI
Target Description K06H7.6 /REP_DB=WormBase Gene ID /WP=CE26943 /TR=SW:P34514 /GB=AAF99984.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066361 NCBI Caenorhabditis elegans Anaphase Promoting Complex; see also mat family member (apc-2) (apc-2) mRNA, complete cds. 11/11 A 
SNAP00000036729 ENSEMBL cdna:SNAP chromosome:CEL140:III:8080591:8083529:1 11/11 None
GENEFINDER00000036745 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8080591:8083529:1 11/11 None
K06H7.6 ENSEMBL cdna:known chromosome:CEL140:III:8080548:8083548:1 gene:K06H7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8080570-8082019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol apc-2
Ensembl K06H7.6
Entrez Gene 176139 Entrez gene
SwissProt P34514 EMBL-EBI
WormBase CE26943 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7049 cell cycle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99984 Anaphase promoting complex; see also mat protein 2 [Caenorhabditis elegans] ref|NP_498762.1| Anaphase Promoting Complex; see also mat family member (apc-2) [Caenorhabditis elegans] sp|P34514|ANC2_CAEEL Anaphase-promoting complex subunit 2 (APC2) (Cyclosome subunit 2) 0.0
blast CAE75059 Hypothetical protein CBG22973 [Caenorhabditis briggsae] 0.0
blast XP_415533 PREDICTED: similar to Anaphase promoting complex subunit 2 (APC2) (Cyclosome subunit 2) [Gallus gallus] 7.0E-52
Sequence
Target Sequence 
>C. ELEGANS:187508_AT
ggaattctcaatgcaaatcgtcacatgaacgcagcactttcagtgtatattcgcgagctt
gctgcaacattggtgatgcacgagaaagcggcttttgacaatgagctgagatgttcaatg
tttcaagaaattatggagagtctgaggatttggtcagatcaagtaacaatgcaagacgca
ttccatttaattagtgacactatttacaaagatgtcttccaaatgctttccaaaaacgca
tatgaaatgatcgccgtagattttccagtaaaatttcgcagtctcatcacaatgaaatat
tgccttttgagaactaataatcatgggagagtcgatttcacaaattacttgatagatcaa
gttaacacaaaacttcttgttgcatcggttgatacaaaagacattttgaaagcttatgcg
gcgtgcgtagaatctcttcgtgaaatggacaatagttgcgtggttatgcataaagtttgt
ggagttatcagagaatatttgaaaaggcgacctgacactgtacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTCTCAATGCAAATCGTCACA 97 535 463 Antisense
ATCGTCACATGAACGCAGCACTTTC 684 35 479 Antisense
GCACTTTCAGTGTATATTCGCGAGC 134 317 496 Antisense
ATATTCGCGAGCTTGCTGCAACATT 181 19 509 Antisense
GTGATGCACGAGAAAGCGGCTTTTG 117 483 535 Antisense
AATGATCGCCGTAGATTTTCCAGTA 284 165 708 Antisense
AAAATTTCGCAGTCTCATCACAATG 353 133 732 Antisense
AAAACTTCTTGTTGCATCGGTTGAT 218 131 831 Antisense
TGAAAGCTTATGCGGCGTGCGTAGA 183 573 869 Antisense
GCGTGCGTAGAATCTCTTCGTGAAA 99 293 883 Antisense
AAAAGGCGACCTGACACTGTACAAC 183 129 964 Antisense
Sequence Source Affymetrix Proprietary Database