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[187506_s_at]

Description B0416.5 /REP_DB=WormBase Gene ID /WP=CE02435 /TR=SW:Q11073 /GB=AAG38882.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 0      6grp_total > 17      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 857
1 2 3 4 range
A 2621.5
(3)
P 		2463.1
(1.9)
P 		2029
(-1.3)
P 		1793.7
(-3)
P 		828
B 2166.7
(1)
P 		2367.2
(3)
P 		2095.7
(0.3)
P 		1765
(-3)
P 		602
C 2293
(3)
P 		2187.3
(1.7)
P 		2228.8
(2.2)
P 		1786.6
(-3)
P 		506
avr 2360.4
(3) 		2339.2
(2.8) 		2117.8
(0.5) 		1781.8
(-3) 		579

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1120
1 2 3 4 5 6 range
A 2270.5
(3)
P 		1859
(0.8)
P 		1151
(-3)
P 		1849.6
(0.7)
P 		1346.8
(-2)
P 		1825
(0.6)
P 		1120
B 2227.4
(3)
P 		1648.3
(-0.8)
P 		1302.4
(-3)
P 		1406.9
(-2.3)
P 		1339.5
(-2.8)
P 		1507.7
(-1.7)
P 		925
C 2257.2
(3)
P 		1584.3
(-1.8)
P 		1923.7
(0.6)
P 		1588.5
(-1.8)
P 		1414.2
(-3)
P 		1738.6
(-0.7)
P 		843
avr 2251.7
(3) 		1697.2
(-0.8) 		1459
(-2.4) 		1615
(-1.3) 		1366.8
(-3) 		1690.4
(-0.8) 		885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 954.5
(3)
P 		534.7
(-0.6)
P 		530.4
(-0.7)
P 		262.6
(-3)
P 		692
B 690.9
(3)
P 		584.7
(1)
P 		485.6
(-0.9)
P 		376.1
(-3)
P 		315
C 759
(2.8)
P 		628.9
(1.1)
P 		776.8
(3)
P 		301.3
(-3)
P 		476
avr 801.5
(3) 		582.8
(0.3) 		597.6
(0.5) 		313.3
(-3) 		488

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 586
1 2 3 4 5 6 range
A 418.5
(-0.5)
P 		661.2
(3)
P 		250.7
(-3)
P 		469.1
(0.2)
P 		406.4
(-0.7)
P 		444.3
(-0.2)
P 		411
B 775
(3)
P 		548.7
(0)
P 		316.3
(-3)
P 		372.6
(-2.3)
P 		544.2
(-0)
P 		562.2
(0.2)
P 		459
C 836.6
(3)
P 		483.4
(-1.1)
P 		489.6
(-1)
P 		319.4
(-3)
P 		457.6
(-1.4)
P 		582
(0)
P 		517
avr 676.7
(3) 		564.4
(0.9) 		352.2
(-3) 		387
(-2.4) 		469.4
(-0.8) 		529.5
(0.3) 		325
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187506_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16723
Sequence Type Exemplar sequence
Representative Public ID B0416.5 NCBI
Target Description B0416.5 /REP_DB=WormBase Gene ID /WP=CE02435 /TR=SW:Q11073 /GB=AAG38882.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077161(11), NM_077162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077161 NCBI Caenorhabditis elegans B0416.5a (B0416.5) mRNA, complete cds. 11/11 None
NM_077162 NCBI Caenorhabditis elegans B0416.5b (B0416.5) mRNA, complete cds. 11/11 None
SNAP00000036820 ENSEMBL cdna:SNAP chromosome:CEL140:X:9269002:9270766:-1 11/11 None
GENEFINDER00000036833 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9269002:9270766:-1 11/11 None
B0416.5a.5 ENSEMBL cdna:known chromosome:CEL140:X:9268511:9270783:-1 gene:B0416.5 11/11 None
B0416.5a.2 ENSEMBL cdna:known chromosome:CEL140:X:9268564:9270785:-1 gene:B0416.5 11/11 A 
B0416.5a.1 ENSEMBL cdna:known chromosome:CEL140:X:9268564:9270783:-1 gene:B0416.5 11/11 A 
B0416.5a.3 ENSEMBL cdna:known chromosome:CEL140:X:9268568:9271086:-1 gene:B0416.5 11/11 None
B0416.5a.4 ENSEMBL cdna:known chromosome:CEL140:X:9268568:9271086:-1 gene:B0416.5 11/11 None
B0416.5b ENSEMBL cdna:known chromosome:CEL140:X:9269002:9270766:-1 gene:B0416.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9269001-9270766(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0416.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38882 Hypothetical protein B0416.5a [Caenorhabditis elegans] ref|NP_509562.1| B0416.5a [Caenorhabditis elegans] sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X 0.0
blast CAE69845 Hypothetical protein CBG16171 [Caenorhabditis briggsae] 0.0
blast AAL11101 Hypothetical protein B0416.5b [Caenorhabditis elegans] ref|NP_509563.1| B0416.5b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509562.1 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
NP_509563.1 10 46-68,96-118,139-158,164-186,219-241,256-275,288-305,310-332,344-366,401-423
B0416.5a.5 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.2 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.1 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.3 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.4 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5b 10 46-68,96-118,139-158,164-186,219-241,256-275,288-305,310-332,344-366,401-423
SNAP00000036820 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
GENEFINDER00000036833 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
Sequence
Target Sequence 
>C. ELEGANS:187506_S_AT
atgtgctgctcttatgattgtcggaggtgtattcggtgccgctgcaagcagtatctttgt
ggatcgcaccaagctctatgaggagactctcaaaattgctcttggagctgcagtcatatt
tggcttgattttccttcagctcactcttcatcaaggatactcagttattctcggtgttac
ttgtcttttgtttggagttcttggactggccacgtatccaattggtttggaattggcttc
ggaatgcacattcccagtgtctgaagctacttcaaccggactcattgttttgtctggaca
aattcaaagtgtcatctacgtcttcattatgaagaactttgcccgtccactccaaccaga
tcgcatgcacattcaagtctgccaactcaccccagacgatacaatcaatacaccaaagga
taataccatgtccatcatgattttctcacttcttgctacacttctcgttcttacacttgt
ggtcctcttcaaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCTGCTCTTATGATTGTCGGA 622 49 909 Antisense
GGATCGCACCAAGCTCTATGAGGAG 576 511 969 Antisense
TTTGGCTTGATTTTCCTTCAGCTCA 692 665 1027 Antisense
GTTATTCTCGGTGTTACTTGTCTTT 376 447 1072 Antisense
GCACATTCCCAGTGTCTGAAGCTAC 213 313 1154 Antisense
TGAAGCTACTTCAACCGGACTCATT 535 571 1170 Antisense
TTATGAAGAACTTTGCCCGTCCACT 343 665 1235 Antisense
GATCGCATGCACATTCAAGTCTGCC 516 417 1267 Antisense
GTCCATCATGATTTTCTCACTTCTT 510 477 1338 Antisense
TACACTTCTCGTTCTTACACTTGTG 327 643 1365 Antisense
TTACACTTGTGGTCCTCTTCAAACC 258 683 1379 Antisense
Sequence Source Affymetrix Proprietary Database