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[187505_at]

Description B0310.3 /REP_DB=WormBase Gene ID /WP=CE03876 /TR=SW:Q10939 /GB=AAA81767.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 43      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 301.8
(-2.8)
P 		520.7
(3)
P 		294.1
(-3)
P 		353.7
(-1.4)
P 		227
B 331.4
(-2.4)
P 		470.4
(3)
P 		316.2
(-3)
P 		317.6
(-2.9)
P 		154
C 336.7
(1.4)
P 		388.7
(3)
P 		325.6
(1.1)
P 		190.7
(-3)
P 		198
avr 323.3
(-1.7) 		459.9
(3) 		312
(-2.1) 		287.3
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 184.5
(-3)
P 		454.5
(0.6)
P 		561.3
(2)
P 		640.8
(3)
P 		315.2
(-1.3)
P 		198
(-2.8)
P 		456
B 169
(-2.8)
P 		501.2
(1.6)
P 		603
(3)
P 		561
(2.4)
P 		311.9
(-0.9)
P 		157.5
(-3)
P 		446
C 140.5
(-3)
P 		519.2
(1)
P 		707.3
(3)
P 		689.1
(2.8)
P 		236.7
(-2)
P 		214.1
(-2.2)
P 		567
avr 164.7
(-3) 		491.6
(1.2) 		623.9
(2.9) 		630.3
(3) 		287.9
(-1.4) 		189.9
(-2.7) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 109.9
(2.7)
P 		113
(3)
P 		76.9
(-0.5)
P 		51.8
(-3)
P 		61
B 105.7
(1.7)
P 		116.2
(3)
P 		73.3
(-2.3)
P 		67.7
(-3)
P 		49
C 111.5
(2.9)
P 		111.8
(2.9)
P 		113.5
(3)
P 		32.2
(-3)
P 		81
avr 109
(2.6) 		113.7
(3) 		87.9
(0.5) 		50.6
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 34
(-3)
P 		161.6
(3)
P 		122.2
(1.1)
P 		162.5
(3)
P 		95.1
(-0.1)
P 		48.2
(-2.3)
P 		129
B 58.8
(-3)
P 		166.8
(3)
P 		146.4
(1.9)
P 		148.6
(2)
P 		126.7
(0.8)
P 		58.7
(-3)
P 		108
C 52.1
(-3)
P 		158.4
(2)
P 		180
(3)
P 		138.6
(1.1)
P 		76.6
(-1.9)
P 		71.7
(-2.1)
P 		128
avr 48.3
(-3) 		162.3
(3) 		149.5
(2.3) 		149.9
(2.3) 		99.5
(-0.3) 		59.5
(-2.4) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18087
Sequence Type Exemplar sequence
Representative Public ID B0310.3 NCBI
Target Description B0310.3 /REP_DB=WormBase Gene ID /WP=CE03876 /TR=SW:Q10939 /GB=AAA81767.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075709 NCBI Caenorhabditis elegans B0310.3 (B0310.3) mRNA, complete cds. 11/11 None
SNAP00000007899 ENSEMBL cdna:SNAP chromosome:CEL140:X:510819:513137:-1 11/11 None
GENEFINDER00000007908 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:510841:515146:-1 11/11 None
B0310.3 ENSEMBL cdna:known chromosome:CEL140:X:510900:512702:-1 gene:B0310.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:510899-512702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0310.3
Entrez Gene 181923 Entrez gene
SwissProt Q10939 EMBL-EBI
WormBase CE03876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81767 Hypothetical protein B0310.3 [Caenorhabditis elegans] ref|NP_508110.1| B0310.3 [Caenorhabditis elegans] sp|Q10939|YWS3_CAEEL Hypothetical protein B0310.3 in chromosome X 1.0E-108
blast AAA81767 Hypothetical protein B0310.3 [Caenorhabditis elegans] ref|NP_508110.1| B0310.3 [Caenorhabditis elegans] sp|Q10939|YWS3_CAEEL Hypothetical protein B0310.3 in chromosome X 1.0E-100
blast AAA81767 Hypothetical protein B0310.3 [Caenorhabditis elegans] ref|NP_508110.1| B0310.3 [Caenorhabditis elegans] sp|Q10939|YWS3_CAEEL Hypothetical protein B0310.3 in chromosome X 1.0E-99
blast CAE63655 Hypothetical protein CBG08157 [Caenorhabditis briggsae] 9.0E-19
blast CAE63655 Hypothetical protein CBG08157 [Caenorhabditis briggsae] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508110.1 1 216-238
B0310.3 1 216-238
SNAP00000007899 1 364-386
GENEFINDER00000007908 1 416-438
Sequence
Target Sequence 
>C. ELEGANS:187505_AT
tgaaacctgcagatgtgccaactccgccgacaaaagttgtagagaataaagaagaagtta
tcaaactcgaggtcattgagcaaccagaacccatcgtactaccagtatcaactccaaccg
tcaccttttcccgctttgaagagatgaagagagtggtaaaggtagagaaagctcaggaga
gcgcgaaaaccaaggctttgaaaaaatccaaagctatttcgatttcaaggcatgttggct
tcctgcagattttggaaaagctagaggaaaccgaggaaaagcctcaagttgaaaatgaga
aaaaagtagtggtaaagcatgttcaaagtgctagaaagaatcaaaaaaagggcaggaaga
atcgtaaagtggagccaccaaaagaagaatttgaaccctacgaggaagaccactacaact
ttaaacgttacttccttatcatcggtgtctatgttctagtattcatttacgtttgcacta
acgttttgaccgtcggtgtgtcatatgaatttccatacatcacacttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACCTGCAGATGTGCCAACTCC 195 573 230 Antisense
GGTCATTGAGCAACCAGAACCCATC 666 499 300 Antisense
CAGAACCCATCGTACTACCAGTATC 100 205 314 Antisense
TCACCTTTTCCCGCTTTGAAGAGAT 582 625 350 Antisense
AGCTATTTCGATTTCAAGGCATGTT 343 79 441 Antisense
CATGTTGGCTTCCTGCAGATTTTGG 31 211 460 Antisense
GAACCCTACGAGGAAGACCACTACA 25 347 622 Antisense
ACGTTACTTCCTTATCATCGGTGTC 699 93 654 Antisense
CATCGGTGTCTATGTTCTAGTATTC 251 211 669 Antisense
GCACTAACGTTTTGACCGTCGGTGT 319 237 704 Antisense
GAATTTCCATACATCACACTTGCCA 33 325 736 Antisense
Sequence Source Affymetrix Proprietary Database