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[187504_at]

Description B0563.8 /REP_DB=WormBase Gene ID /WP=CE02446 /TR=SW:Q11084 /GB=AAA68324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 5.5
(-3)
A 		12.6
(-2.1)
A 		9.3
(-2.5)
A 		55.2
(3)
A 		50
B 4.4
(-3)
A 		13.8
(1.7)
A 		13.7
(1.6)
A 		16.5
(3)
A 		12
C 8.5
(0.2)
A 		9.9
(1.9)
A 		5.8
(-3)
A 		10.8
(3)
A 		5
avr 6.1
(-3) 		12.1
(-1.3) 		9.6
(-2) 		27.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.6
(-1.9)
A 		6.3
(-2.2)
A 		5.6
(-2.3)
A 		32.1
(3)
A 		2.2
(-3)
A 		6.3
(-2.2)
A 		30
B 10.3
(3)
A 		5.6
(-0.8)
A 		2.9
(-3)
A 		6.5
(-0.1)
A 		4.7
(-1.5)
A 		3.1
(-2.8)
A 		7
C 5
(-0.1)
A 		7.1
(3)
A 		6.1
(1.5)
A 		4.8
(-0.4)
A 		5.2
(0.2)
A 		3
(-3)
A 		4
avr 7.6
(-0.9) 		6.3
(-1.7) 		4.9
(-2.5) 		14.5
(3) 		4
(-3) 		4.1
(-2.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2
(-3)
A 		2.7
(-2.3)
A 		2.4
(-2.6)
A 		8.1
(3)
A 		6
B 1.4
(-3)
A 		3.4
(2.7)
A 		3.2
(2.1)
A 		3.5
(3)
A 		2
C 2.8
(3)
A 		2.8
(3)
A 		2
(-1.8)
A 		1.8
(-3)
A 		1
avr 2.1
(-3) 		3
(-0.8) 		2.5
(-2) 		4.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(-2.4)
A 		2.2
(-1.8)
A 		1.2
(-2.6)
A 		8.1
(3)
A 		0.7
(-3)
A 		1.5
(-2.4)
A 		7
B 3.6
(3)
A 		1.9
(-0.5)
A 		0.7
(-3)
A 		1.7
(-0.9)
A 		1.9
(-0.5)
A 		1.2
(-2)
A 		3
C 1.8
(1)
A 		2.2
(3)
A 		1.6
(0)
A 		1
(-3)
A 		1.7
(0.5)
A 		1
(-3)
A 		1
avr 2.3
(-0.3) 		2.1
(-0.8) 		1.2
(-3) 		3.6
(3) 		1.4
(-2.5) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15992
Sequence Type Exemplar sequence
Representative Public ID B0563.8 NCBI
Target Description B0563.8 /REP_DB=WormBase Gene ID /WP=CE02446 /TR=SW:Q11084 /GB=AAA68324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077147 NCBI Caenorhabditis elegans B0563.8 (B0563.8) mRNA, complete cds. 11/11 None
B0563.8 ENSEMBL cdna:known chromosome:CEL140:X:9173618:9174143:-1 gene:B0563.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9173616-9174142(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0563.8
Entrez Gene 182042 Entrez gene
SwissProt Q11084 EMBL-EBI
WormBase CE02446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68324 Hypothetical protein B0563.8 [Caenorhabditis elegans] ref|NP_509548.1| B0563.8 [Caenorhabditis elegans] sp|Q11084|YT68_CAEEL Hypothetical protein B0563.8 in chromosome X 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:187504_AT
atgattccgtaccgtaattttattgtgtcaaagtcaggacgtgcaaagacaaccaaaaac
agaaactctctaacttgttccggtgctggttttgtccgattcaccgagccagctgagaag
tggagcaatattcgtcatcgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTCCGTACCGTAATTTTATTG 637 45 13 Antisense
TCCGTACCGTAATTTTATTGTGTCA 177 593 18 Antisense
ATTGTGTCAAAGTCAGGACGTGCAA 443 3 34 Antisense
GGACGTGCAAAGACAACCAAAAACA 218 511 49 Antisense
AGAAACTCTCTAACTTGTTCCGGTG 285 73 73 Antisense
CTAACTTGTTCCGGTGCTGGTTTTG 384 223 82 Antisense
TTCCGGTGCTGGTTTTGTCCGATTC 396 699 90 Antisense
CGGTGCTGGTTTTGTCCGATTCACC 488 243 93 Antisense
CCGATTCACCGAGCCAGCTGAGAAG 161 265 108 Antisense
ACCGAGCCAGCTGAGAAGTGGAGCA 436 89 115 Antisense
AGTGGAGCAATATTCGTCATCGCCC 531 59 131 Antisense
Sequence Source Affymetrix Proprietary Database