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[187503_at]

Description C14B9.3 /REP_DB=WormBase Gene ID /WP=CE26868 /TR=SW:P34330 /GB=AAA27948.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 54      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1796
1 2 3 4 range
A 721.2
(-1.3)
P 		1792.9
(3)
P 		1668.5
(2.5)
P 		294.9
(-3)
P 		1498
B 650.4
(-1.6)
P 		2028.9
(3)
P 		1912.9
(2.6)
P 		233
(-3)
P 		1796
C 715.1
(-1.3)
P 		1982
(3)
P 		1887.6
(2.7)
P 		233.2
(-3)
P 		1749
avr 695.6
(-1.4) 		1934.6
(3) 		1823
(2.6) 		253.7
(-3) 		1681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1496
1 2 3 4 5 6 range
A 777.4
(-1.9)
P 		1040.3
(-0.5)
P 		1374.3
(1.3)
P 		1686.6
(3)
P 		1634.8
(2.7)
P 		577.3
(-3)
P 		1109
B 854.8
(-2.1)
P 		1179.4
(-0.6)
P 		1557.7
(1.3)
P 		1912
(3)
P 		1768.6
(2.3)
P 		679.2
(-3)
P 		1233
C 735.6
(-2.5)
P 		1184.8
(-0.6)
P 		1069
(-1.1)
P 		2073.1
(3)
P 		1344.1
(0)
P 		607.6
(-3)
P 		1466
avr 789.3
(-2.2) 		1134.8
(-0.6) 		1333.7
(0.4) 		1890.6
(3) 		1582.5
(1.5) 		621.4
(-3) 		1269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 262.6
(0.3)
P 		389.2
(2.3)
P 		436.2
(3)
P 		43.2
(-3)
P 		393
B 207.4
(-0.9)
P 		501.1
(3)
P 		443.3
(2.2)
P 		49.7
(-3)
P 		451
C 236.7
(-1.1)
P 		569.8
(2.1)
P 		657.9
(3)
P 		39.3
(-3)
P 		619
avr 235.6
(-0.5) 		486.7
(2.7) 		512.5
(3) 		44.1
(-3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 143.3
(-3)
P 		370
(0.9)
P 		299.3
(-0.3)
P 		427.8
(1.9)
P 		493.3
(3)
P 		140.6
(-3)
P 		353
B 297.4
(-2.4)
P 		392.6
(-1.2)
P 		378.3
(-1.4)
P 		506.4
(0.3)
P 		718.6
(3)
P 		253.3
(-3)
P 		465
C 272.7
(-1.2)
P 		361.5
(1.1)
P 		272.1
(-1.2)
P 		416.9
(2.5)
P 		434.9
(3)
P 		203.4
(-3)
P 		232
avr 237.8
(-2.3) 		374.7
(0) 		316.6
(-1) 		450.4
(1.3) 		548.9
(3) 		199.1
(-3) 		350
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7557
Sequence Type Exemplar sequence
Representative Public ID C14B9.3 NCBI
Target Description C14B9.3 /REP_DB=WormBase Gene ID /WP=CE26868 /TR=SW:P34330 /GB=AAA27948.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066370 NCBI Caenorhabditis elegans C14B9.3 (C14B9.3) mRNA, complete cds. 11/11 None
SNAP00000018767 ENSEMBL cdna:SNAP chromosome:CEL140:III:8108711:8111077:1 11/11 None
GENEFINDER00000018774 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8108711:8111077:1 11/11 None
C14B9.3 ENSEMBL cdna:known chromosome:CEL140:III:8108711:8111096:1 gene:C14B9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8108708-8111075(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B9.3
Entrez Gene 176144 Entrez gene
SwissProt P34330 EMBL-EBI
WormBase CE26868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27948 Hypothetical protein C14B9.3 [Caenorhabditis elegans] ref|NP_498771.1| C14B9.3 [Caenorhabditis elegans] sp|P34330|YKZ3_CAEEL Hypothetical protein C14B9.3 in chromosome III 0.0
blast CAE70209 Hypothetical protein CBG16685 [Caenorhabditis briggsae] 1.0E-175
blast AAA27948 Hypothetical protein C14B9.3 [Caenorhabditis elegans] ref|NP_498771.1| C14B9.3 [Caenorhabditis elegans] sp|P34330|YKZ3_CAEEL Hypothetical protein C14B9.3 in chromosome III 1.0E-156
blast CAE70209 Hypothetical protein CBG16685 [Caenorhabditis briggsae] 1.0E-142
blast AAA27948 Hypothetical protein C14B9.3 [Caenorhabditis elegans] ref|NP_498771.1| C14B9.3 [Caenorhabditis elegans] sp|P34330|YKZ3_CAEEL Hypothetical protein C14B9.3 in chromosome III 1.0E-126
blast CAE70209 Hypothetical protein CBG16685 [Caenorhabditis briggsae] 1.0E-116
blast AAB66093 Hypothetical protein F36H9.5 [Caenorhabditis elegans] ref|NP_503503.1| F36H9.5 [Caenorhabditis elegans] 8.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498771.1 6 57-79,134-151,172-194,209-231,243-262,277-299
C14B9.3 6 57-79,134-151,172-194,209-231,243-262,277-299
SNAP00000018767 7 57-79,153-175,190-212,233-255,270-292,304-323,338-360
GENEFINDER00000018774 7 57-79,162-181,196-218,239-261,276-298,310-329,344-366
Sequence
Target Sequence 
>C. ELEGANS:187503_AT
gaaatcttctccgtcatgagtacgacaaaaagttctcatcattacataaggttatggcgg
attcaatgccaattttcacttttgttgaagctttcatgatgtccctattcagtattgtta
ctgtacatgaggattttccagaagcgaatcgtttctttaaaattgtatttgcaatgtcat
ccgttgttagtatgctgaccaccactacggttatgtttgcattttcgtcgaattctgaaa
gtaaatgggatactgtatcaatgatcatgaaattaatatcagttgttatttatgtatatt
taatgccacaatatatgcaatatcatcaatcttctatcacatttccaatttgtcattcat
atatgccccaactgttcgctttaatggaatatttcattattattgcatatgcaacgtttc
atctgtcattcctaatcgatattagaaacatttcattcatttgtttcccacgatcgtcca
gtggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCTTCTCCGTCATGAGTACGA 230 363 371 Antisense
GGCGGATTCAATGCCAATTTTCACT 219 541 426 Antisense
GAAGCTTTCATGATGTCCCTATTCA 440 341 457 Antisense
ATCCGTTGTTAGTATGCTGACCACC 451 39 549 Antisense
GCTGACCACCACTACGGTTATGTTT 6 297 564 Antisense
TCATCAATCTTCTATCACATTTCCA 255 621 693 Antisense
TTGTCATTCATATATGCCCCAACTG 459 705 720 Antisense
TGCCCCAACTGTTCGCTTTAATGGA 211 583 734 Antisense
ACGTTTCATCTGTCATTCCTAATCG 687 93 784 Antisense
CATTTCATTCATTTGTTTCCCACGA 513 215 819 Antisense
GTTTCCCACGATCGTCCAGTGGAGA 456 451 833 Antisense
Sequence Source Affymetrix Proprietary Database