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[187501_at]

Description R10H1.2 /REP_DB=WormBase Gene ID /WP=CE02029 /TR=SW:Q09344 /GB=AAC46710.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 17      6grp_total > 24      4grp_total > 30      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 307.1
(3)
P 		169.4
(-1.4)
A 		120.1
(-3)
P 		268.5
(1.8)
P 		187
B 425
(3)
P 		182.1
(-1.2)
P 		77.9
(-3)
A 		205.4
(-0.8)
M 		347
C 408.4
(3)
P 		128.7
(-2.8)
A 		119.4
(-3)
A 		316.9
(1.1)
P 		289
avr 380.2
(3) 		160.1
(-1.8) 		105.8
(-3) 		263.6
(0.5) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 393.7
(3)
P 		262.9
(0.4)
P 		312
(1.4)
P 		161.8
(-1.7)
P 		152.4
(-1.8)
A 		94.8
(-3)
A 		299
B 303.7
(2.3)
P 		329.3
(3)
P 		212.7
(-0.4)
P 		188.7
(-1.1)
P 		135.5
(-2.7)
A 		123.9
(-3)
A 		205
C 283.4
(1.9)
P 		322.5
(3)
P 		224.2
(0.4)
M 		147.7
(-1.7)
A 		99.1
(-3)
A 		139.3
(-1.9)
A 		223
avr 326.9
(3) 		304.9
(2.4) 		249.6
(0.8) 		166.1
(-1.6) 		129
(-2.7) 		119.3
(-3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 111.8
(3)
P 		36.8
(-2.6)
A 		31.4
(-3)
P 		39.3
(-2.4)
P 		80
B 135.5
(3)
P 		45
(-1.6)
P 		18.1
(-3)
A 		43.8
(-1.7)
M 		117
C 135.2
(3)
P 		37
(-3)
A 		41.6
(-2.7)
A 		53.4
(-2)
P 		98
avr 127.5
(3) 		39.6
(-2.4) 		30.4
(-3) 		45.5
(-2.1) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 72.6
(1.2)
P 		93.5
(3)
P 		67.9
(0.8)
P 		41
(-1.5)
P 		46
(-1)
A 		23.1
(-3)
A 		70
B 105.7
(2.6)
P 		109.6
(3)
P 		51.7
(-2.5)
P 		50
(-2.6)
P 		55
(-2.2)
A 		46.2
(-3)
A 		63
C 105
(3)
P 		98.4
(2.5)
P 		57.1
(-0.8)
M 		29.7
(-3)
A 		32.1
(-2.8)
A 		46.6
(-1.7)
A 		75
avr 94.4
(2.4) 		100.5
(3) 		58.9
(-1) 		40.2
(-2.8) 		44.4
(-2.4) 		38.6
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4593
Sequence Type Exemplar sequence
Representative Public ID R10H1.2 NCBI
Target Description R10H1.2 /REP_DB=WormBase Gene ID /WP=CE02029 /TR=SW:Q09344 /GB=AAC46710.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027108(11), NM_001027109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027108 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-14) (srab-14) mRNA, complete cds. 11/11 None
NM_001027109 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-14) (srab-14) mRNA, complete cds. 11/11 None
SNAP00000033726 ENSEMBL cdna:SNAP chromosome:CEL140:II:7497298:7499401:-1 11/11 None
GENEFINDER00000033732 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7497298:7499401:-1 11/11 None
R10H1.2 ENSEMBL cdna:known chromosome:CEL140:II:7497667:7499401:-1 gene:R10H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7497663-7499398(-) 100.0 100.0
Public Domain and Genome References
Ensembl R10H1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022279 Serpentine Receptor, class AB (class A-like) family member (srab-14) [Caenorhabditis elegans] gb|AAX22284.1| Serpentine receptor, class ab (class a-like) protein 14, isoform a [Caenorhabditis elegans] 0.0
blast NP_001022280 Serpentine Receptor, class AB (class A-like) family member (srab-14) [Caenorhabditis elegans] gb|AAC46710.2| Serpentine receptor, class ab (class a-like) protein 14, isoform b [Caenorhabditis elegans] sp|Q09344|YRP2_CAEEL Hypothetical protein R10H1.2 from chromosome II 1.0E-152
blast NP_001022279 Serpentine Receptor, class AB (class A-like) family member (srab-14) [Caenorhabditis elegans] gb|AAX22284.1| Serpentine receptor, class ab (class a-like) protein 14, isoform a [Caenorhabditis elegans] 1.0E-147
blast NP_001022280 Serpentine Receptor, class AB (class A-like) family member (srab-14) [Caenorhabditis elegans] gb|AAC46710.2| Serpentine receptor, class ab (class a-like) protein 14, isoform b [Caenorhabditis elegans] sp|Q09344|YRP2_CAEEL Hypothetical protein R10H1.2 from chromosome II 1.0E-146
blast NP_001022280 Serpentine Receptor, class AB (class A-like) family member (srab-14) [Caenorhabditis elegans] gb|AAC46710.2| Serpentine receptor, class ab (class a-like) protein 14, isoform b [Caenorhabditis elegans] sp|Q09344|YRP2_CAEEL Hypothetical protein R10H1.2 from chromosome II 1.0E-142
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022279.1 7 46-68,80-102,124-146,166-188,208-230,263-285,295-317
NP_001022280.1 6 46-68,80-102,124-146,166-188,208-230,268-290
R10H1.2 6 46-68,80-102,124-146,166-188,208-230,268-290
SNAP00000033726 7 46-68,80-102,124-146,166-188,208-230,263-285,295-317
GENEFINDER00000033732 7 69-91,103-125,147-169,189-211,231-253,286-308,318-340
Sequence
Target Sequence 
>C. ELEGANS:187501_AT
ttgcagcactcattgcgtgccttcaacttgattttattgcattctaccatttggcactca
ctttgacagcagacaatgcttgtgattctatgtatgaagctcgaaaatgtgcaattctca
ggtttccagttgttttatccatttatgcaacactttgtggaattattgttttggcaattg
agcgaacaattgcaactttgaagtataaaacttatgaggcaaacggttctcgagtagtag
gacttgtcttagtcacaggacaatggtttgtttgtatcatagttgcagtattctcagttc
ttcttcgatctgatcctggatacgtgcattactgtacagcatacgtgtctcatccaagaa
cttcagttttctcattgtgttttatgtcagccttggaagttgccacactggtttattttg
tcttacttcttcaatcaaatcaacgaagacaagtgaacgaatttgtgaacaaagcaatgc
attcattgtctgaaagatatcaattacaggaaaatgtgagaatcatgaaaattttaattc
cttctatcacagttcatgcaattctcgggttcattggtcttgggtctatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAGCACTCATTGCGTGCCTTCA 605 703 341 Antisense
TGCATTCTACCATTTGGCACTCACT 546 579 378 Antisense
ATGTGCAATTCTCAGGTTTCCAGTT 671 49 447 Antisense
GTTGCAGTATTCTCAGTTCTTCTTC 220 439 622 Antisense
AGTTCTTCTTCGATCTGATCCTGGA 20 65 636 Antisense
TGTACAGCATACGTGTCTCATCCAA 605 557 673 Antisense
GTCAGCCTTGGAAGTTGCCACACTG 158 467 726 Antisense
TGGTTTATTTTGTCTTACTTCTTCA 180 551 749 Antisense
TAATTCCTTCTATCACAGTTCATGC 121 635 875 Antisense
ACAGTTCATGCAATTCTCGGGTTCA 139 107 889 Antisense
GGGTTCATTGGTCTTGGGTCTATGT 204 497 907 Antisense
Sequence Source Affymetrix Proprietary Database