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[187499_at]

Description R10E11.5 /REP_DB=WormBase Gene ID /WP=CE00307 /TR=SW:P34549 /GB=CAA82348.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      4grp_high_8_8 > 11      6grp_total > 33      4grp_total > 13      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 105.6
(-0.4)
P 		68.4
(-3)
P 		74.1
(-2.6)
A 		155.8
(3)
P 		87
B 78.8
(-0.5)
M 		57.9
(-3)
A 		65.5
(-2.1)
P 		108.2
(3)
P 		50
C 96.9
(1)
P 		62.3
(-1.7)
P 		45.6
(-3)
P 		122.3
(3)
P 		77
avr 93.8
(-0.1) 		62.9
(-2.9) 		61.7
(-3) 		128.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 88.8
(-0.1)
P 		51.7
(-2.9)
M 		128.8
(3)
P 		62.9
(-2.1)
P 		66.4
(-1.8)
P 		51
(-3)
A 		78
B 56.2
(-3)
M 		93.3
(3)
P 		60.3
(-2.3)
P 		68.7
(-1)
P 		64.5
(-1.7)
P 		75.3
(0.1)
M 		37
C 100.8
(3)
P 		96.7
(2.4)
P 		59.7
(-3)
P 		98.5
(2.7)
P 		88.3
(1.2)
P 		94.3
(2.1)
P 		41
avr 81.9
(2.4) 		80.6
(1.6) 		82.9
(3) 		76.7
(-0.8) 		73.1
(-3) 		73.5
(-2.8) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 38.5
(3)
P 		14.8
(-3)
P 		19.4
(-1.8)
A 		22.8
(-1)
P 		24
B 25.1
(3)
M 		14.3
(-3)
A 		15.2
(-2.5)
P 		23.1
(1.9)
P 		11
C 32.1
(3)
P 		17.9
(-2.3)
P 		15.9
(-3)
P 		20.6
(-1.3)
P 		16
avr 31.9
(3) 		15.7
(-3) 		16.8
(-2.6) 		22.2
(-0.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 16.4
(-1.5)
P 		18.4
(-0.7)
M 		28
(3)
P 		16
(-1.6)
P 		20
(-0.1)
P 		12.4
(-3)
A 		16
B 19.5
(-1.2)
M 		31.1
(3)
P 		14.7
(-3)
P 		18.2
(-1.7)
P 		26.2
(1.2)
P 		28.1
(1.9)
M 		16
C 37.4
(3)
P 		29.5
(0.9)
P 		15.2
(-3)
P 		19.8
(-1.8)
P 		28.6
(0.6)
P 		31.6
(1.4)
P 		22
avr 24.4
(1.6) 		26.3
(3) 		19.3
(-2.1) 		18
(-3) 		24.9
(2) 		24
(1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7205
Sequence Type Exemplar sequence
Representative Public ID R10E11.5 NCBI
Target Description R10E11.5 /REP_DB=WormBase Gene ID /WP=CE00307 /TR=SW:P34549 /GB=CAA82348.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066767
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066767 NCBI Caenorhabditis elegans R10E11.5 (R10E11.5) mRNA, complete cds. None
R10E11.5 ENSEMBL cdna:known chromosome:CEL140:III:9785813:9789536:-1 gene:R10E11.5 None
SNAP00000016243 ENSEMBL cdna:SNAP chromosome:CEL140:III:9785964:9789536:-1 None
GENEFINDER00000016256 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9785964:9789536:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9785959-9789223(-) 95.16 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E11.5
Entrez Gene 187778 Entrez gene
SwissProt P34549 EMBL-EBI
WormBase CE28639 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82348 Hypothetical protein R10E11.5 [Caenorhabditis elegans] ref|NP_499168.1| R10E11.5 [Caenorhabditis elegans] sp|P34549|YNJ5_CAEEL Hypothetical protein R10E11.5 in chromosome III 0.0
blast CAA82348 Hypothetical protein R10E11.5 [Caenorhabditis elegans] ref|NP_499168.1| R10E11.5 [Caenorhabditis elegans] sp|P34549|YNJ5_CAEEL Hypothetical protein R10E11.5 in chromosome III 1.0E-156
blast CAE65132 Hypothetical protein CBG09998 [Caenorhabditis briggsae] 1.0E-153
blast CAE65132 Hypothetical protein CBG09998 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:187499_AT
gaaggtggcagatgatactattgataagtccaaaaccactgtagctgctgacgtggcaaa
gatgagtggagctctccaaaaagcagaagaagaagtggtacagacaatagatcaaacagt
gaaaaatataaaatcaaatgtaaatgaagtaaagaaagatgttgaaaaaaatattgctga
aaaagttgacgacatcacaaaggaacttgagaagtctgccaaaagtttagaggagacgac
tgacaaaattggaagtaaaattgataattacccgagcatcttttttctttggcacatttt
tcgtgtcgagaccgcttaccgtattttcgagtataatttggcggctgctattaaatcaaa
cttggaagaagcttctttgaaaaccgaaaaatctgtgaacgatgctgtaaaatcaggaga
aaagttgattggagatcttgcttcagaagctaaaaagacatttgattcagccgagcaaaa
gcttgatgctaaattctcgaaaattggatccacagccgatagtacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTGGCAGATGATACTATTGAT 268 335 1062 Antisense
CCAAAACCACTGTAGCTGCTGACGT 562 275 1091 Antisense
GGCAAAGATGAGTGGAGCTCTCCAA 321 535 1116 Antisense
TACCCGAGCATCTTTTTTCTTTGGC 422 647 1330 Antisense
TTCTTTGGCACATTTTTCGTGTCGA 29 691 1346 Antisense
GACCGCTTACCGTATTTTCGAGTAT 688 381 1371 Antisense
TTCGAGTATAATTTGGCGGCTGCTA 27 693 1387 Antisense
GGCGGCTGCTATTAAATCAAACTTG 640 539 1401 Antisense
GATTGGAGATCTTGCTTCAGAAGCT 702 433 1488 Antisense
AAAGACATTTGATTCAGCCGAGCAA 226 123 1515 Antisense
ATTGGATCCACAGCCGATAGTACAT 488 3 1564 Antisense
Sequence Source Affymetrix Proprietary Database