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[187497_at]

Description C02C2.4 /REP_DB=WormBase Gene ID /WP=CE00030 /TR=SW:P34272 /GB=AAA27912.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_total > 24      4grp_total > 62      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 138.9
(3)
P 		102
(-1.2)
P 		86.2
(-3)
P 		94.3
(-2.1)
P 		53
B 106.1
(1.9)
P 		102.5
(1.4)
P 		113.1
(3)
P 		74
(-3)
P 		39
C 119.1
(1.4)
P 		93.2
(-3)
P 		128.5
(3)
P 		93.4
(-3)
P 		35
avr 121.4
(3) 		99.2
(-0.9) 		109.3
(0.9) 		87.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 197.9
(3)
P 		183.2
(2.4)
P 		197.3
(3)
P 		116.4
(-0.1)
P 		59.5
(-2.3)
P 		41.2
(-3)
A 		157
B 257.8
(3)
P 		178.1
(0.6)
P 		151.1
(-0.2)
P 		95.5
(-1.9)
P 		76.3
(-2.4)
P 		57.6
(-3)
P 		200
C 215.4
(2.5)
P 		230.1
(3)
P 		117.6
(-0.5)
P 		139.3
(0.2)
P 		41.9
(-2.8)
M 		34.5
(-3)
P 		196
avr 223.7
(3) 		197.1
(2.1) 		155.3
(0.7) 		117.1
(-0.6) 		59.2
(-2.5) 		44.4
(-3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 50.6
(3)
P 		22.1
(-1.6)
P 		22.5
(-1.6)
P 		13.8
(-3)
P 		37
B 33.8
(3)
P 		25.3
(0.2)
P 		26.2
(0.5)
P 		15.8
(-3)
P 		18
C 39.4
(1.9)
P 		26.8
(-0.7)
P 		44.8
(3)
P 		15.7
(-3)
P 		29
avr 41.3
(3) 		24.7
(-0.8) 		31.2
(0.7) 		15.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 36.5
(-0.1)
P 		65.2
(3)
P 		43
(0.6)
P 		29.5
(-0.9)
P 		18
(-2.1)
P 		10
(-3)
A 		55
B 89.7
(3)
P 		59.3
(0.3)
P 		36.7
(-1.7)
P 		25.3
(-2.7)
P 		31
(-2.2)
P 		21.5
(-3)
P 		68
C 79.8
(3)
P 		70.2
(2.2)
P 		29.9
(-1.4)
P 		28
(-1.6)
P 		13.6
(-2.8)
M 		11.5
(-3)
P 		68
avr 68.7
(3) 		64.9
(2.6) 		36.5
(-0.6) 		27.6
(-1.5) 		20.9
(-2.3) 		14.3
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6054
Sequence Type Exemplar sequence
Representative Public ID C02C2.4 NCBI
Target Description C02C2.4 /REP_DB=WormBase Gene ID /WP=CE00030 /TR=SW:P34272 /GB=AAA27912.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066308 NCBI Caenorhabditis elegans C02C2.4 (C02C2.4) mRNA, complete cds. 11/11 None
SNAP00000005399 ENSEMBL cdna:SNAP chromosome:CEL140:III:7862563:7864674:-1 11/11 None
GENEFINDER00000005409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7862563:7864990:-1 11/11 None
C02C2.4 ENSEMBL cdna:known chromosome:CEL140:III:7862563:7864990:-1 gene:C02C2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7862560-7864988(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02C2.4
Entrez Gene 182107 Entrez gene
SwissProt P34272 EMBL-EBI
WormBase CE00030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27912 Hypothetical protein C02C2.4 [Caenorhabditis elegans] ref|NP_498709.1| C02C2.4 [Caenorhabditis elegans] sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromosome III 0.0
blast CAE66871 Hypothetical protein CBG12249 [Caenorhabditis briggsae] 0.0
blast CAD56246 Hypothetical protein T28F3.4a [Caenorhabditis elegans] ref|NP_503071.2| T28F3.4a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498709.1 10 48-70,139-161,171-193,256-278,325-347,354-376,401-423,430-452,462-484,496-515
C02C2.4 10 48-70,139-161,171-193,256-278,325-347,354-376,401-423,430-452,462-484,496-515
SNAP00000005399 8 68-90,146-168,211-233,248-270,291-310,320-342,354-373,383-405
GENEFINDER00000005409 10 48-70,139-161,171-193,256-278,325-347,354-376,401-423,430-452,462-484,496-515
Sequence
Target Sequence 
>C. ELEGANS:187497_AT
tttactgcaattcccaacatcttcaatatgatattcaaagttgtttggggtattggaata
gataaattaaaagaaaataagattctcagtaatactaaagctgtaaaggtatcacatggt
gttgcaagttttgggagttccttctcacttattttacttgcattctttgtcgattgctct
aatccaacaactggccttattttcttctgtttaatgtatagctcaatgggaacatttgtg
agtggattttacacatcactactcagtttggcaccacaatatactgcaaccatgtctgca
atttcaatgtttgttgcaatgattggtagattgacaactcctgcagtcatgagcatgttc
agaaaagacggaaccgctgcggagtggcagaatatcttcataggatgctcactggcacat
attttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACTGCAATTCCCAACATCTTCA 397 673 1105 Antisense
GCAAGTTTTGGGAGTTCCTTCTCAC 377 321 1228 Antisense
TCCTTCTCACTTATTTTACTTGCAT 651 591 1243 Antisense
TGCATTCTTTGTCGATTGCTCTAAT 420 579 1263 Antisense
TTGCTCTAATCCAACAACTGGCCTT 270 703 1278 Antisense
CAACTGGCCTTATTTTCTTCTGTTT 494 185 1292 Antisense
GTGGATTTTACACATCACTACTCAG 395 489 1346 Antisense
TCACTACTCAGTTTGGCACCACAAT 103 627 1360 Antisense
GCACCACAATATACTGCAACCATGT 312 313 1375 Antisense
GACAACTCCTGCAGTCATGAGCATG 644 365 1437 Antisense
GATGCTCACTGGCACATATTTTCTC 684 413 1508 Antisense
Sequence Source Affymetrix Proprietary Database