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[187496_at]

Description T19C3.1 /REP_DB=WormBase Gene ID /WP=CE02876 /TR=SW:Q22566 /GB=AAC46599.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 71      6grp_total > 12      4grp_total > 09      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 382.2
(-3)
P 		505.9
(-0.8)
P 		486.9
(-1.2)
P 		726.2
(3)
P 		344
B 460.5
(-1.9)
P 		423.1
(-3)
P 		423.8
(-3)
P 		626.8
(3)
P 		204
C 411.4
(-3)
P 		441
(-1.8)
P 		425.1
(-2.5)
P 		561.1
(3)
P 		150
avr 418
(-3) 		456.7
(-1.9) 		445.3
(-2.3) 		638
(3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 441.7
(1.5)
P 		490.4
(3)
P 		375.1
(-0.5)
P 		298.4
(-2.8)
P 		332.2
(-1.8)
P 		291.8
(-3)
P 		199
B 376.2
(-0.2)
P 		458.3
(3)
P 		324
(-2.2)
P 		313.3
(-2.6)
P 		302.2
(-3)
P 		345.4
(-1.3)
P 		156
C 336.8
(-1)
P 		458.1
(3)
P 		383.9
(0.5)
P 		323.1
(-1.5)
P 		277.7
(-3)
P 		328.6
(-1.3)
P 		180
avr 384.9
(-0.1) 		468.9
(3) 		361
(-0.9) 		311.6
(-2.7) 		304
(-3) 		321.9
(-2.3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 139.2
(3)
P 		109.8
(-2.4)
P 		127.3
(0.8)
P 		106.3
(-3)
P 		33
B 146.8
(3)
P 		104.5
(-2.2)
P 		98.2
(-3)
P 		133.6
(1.4)
P 		49
C 136.2
(1.7)
P 		126.8
(0.6)
P 		148.2
(3)
P 		94.6
(-3)
P 		54
avr 140.7
(3) 		113.7
(-2.5) 		124.6
(-0.3) 		111.5
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 81.4
(-2.4)
P 		174.4
(3)
P 		81.7
(-2.4)
P 		75.7
(-2.7)
P 		100.2
(-1.3)
P 		71.1
(-3)
P 		103
B 130.9
(1.2)
P 		152.5
(3)
P 		78.7
(-3)
P 		83
(-2.7)
P 		122.8
(0.6)
P 		128.8
(1.1)
P 		74
C 124.8
(1.8)
P 		139.8
(3)
P 		97.7
(-0.4)
P 		65
(-3)
P 		89.9
(-1)
P 		110
(0.6)
P 		75
avr 112.4
(-0.2) 		155.6
(3) 		86
(-2.2) 		74.6
(-3) 		104.3
(-0.8) 		103.3
(-0.9) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8294
Sequence Type Exemplar sequence
Representative Public ID T19C3.1 NCBI
Target Description T19C3.1 /REP_DB=WormBase Gene ID /WP=CE02876 /TR=SW:Q22566 /GB=AAC46599.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064817 NCBI Caenorhabditis elegans T19C3.1 (T19C3.1) mRNA, complete cds. 11/11 None
SNAP00000033746 ENSEMBL cdna:SNAP chromosome:CEL140:III:606988:609520:-1 10/11 None
GENEFINDER00000033755 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:606988:609615:-1 10/11 None
T19C3.1 ENSEMBL cdna:known chromosome:CEL140:III:607042:609970:-1 gene:T19C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:607041-612283(-) 97.39 97.39
Public Domain and Genome References
Gene Title
Ensembl T19C3.1
Entrez Gene 188585 Entrez gene
SwissProt Q22566 EMBL-EBI
WormBase CE30182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL56625 Hypothetical protein T19C3.1 [Caenorhabditis elegans] ref|NP_497218.2| T19C3.1 [Caenorhabditis elegans] sp|Q22566|YSV1_CAEEL Hypothetical protein T19C3.1 in chromosome III 0.0
blast T16885 hypothetical protein T19C3.1 - Caenorhabditis elegans 0.0
blast CAE69222 Hypothetical protein CBG15262 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497218.2 2 54-76,97-115
T19C3.1 2 54-76,97-115
SNAP00000033746 2 15-37,58-76
GENEFINDER00000033755 2 32-54,75-93
Sequence
Target Sequence 
>C. ELEGANS:187496_AT
ggcagaggttctactaaacccgcttggagaggatgatgatgattttgaagttaactcgat
catagataacaatatttcgagaggcatggcgatcgttgacactacacatggataccatcc
agaccttgtagatgatgtgttctcggatccaaactatctccctgcctactccgaaaacag
tcaaattcctcgaaaccttactggatcggctgccaaggtggagctagcagcgccgacgga
tgaagtcaagattgttagggttaatccggaagatgctccgccaactagtgaacgcggaag
tatgttcacaagaagaaacgcgtactccttacgaaaccggaaaatttcaatcgcatcaaa
taatcttgaaagtccaagccaggagaggaagtttaacttatcaatgccagctgggatgct
caataaatccacccagccagacagaccaactatggaaactgtgagcgaggagcatgagcc
atcgcatttttatcgaggcgacagggtgcactcatcggattcggtaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGAGGTTCTACTAAACCCGCTT 267 535 1284 Antisense
GAGGCATGGCGATCGTTGACACTAC 245 405 1364 Antisense
TGGATACCATCCAGACCTTGTAGAT 498 549 1392 Antisense
TGTTCTCGGATCCAAACTATCTCCC 475 561 1421 Antisense
TCCCTGCCTACTCCGAAAACAGTCA 414 597 1442 Antisense
TCGAAACCTTACTGGATCGGCTGCC 558 599 1473 Antisense
GATCGGCTGCCAAGGTGGAGCTAGC 320 419 1487 Antisense
TAATCCGGAAGATGCTCCGCCAACT 110 637 1545 Antisense
GAGCATGAGCCATCGCATTTTTATC 449 389 1753 Antisense
ATCGAGGCGACAGGGTGCACTCATC 646 35 1775 Antisense
GGTGCACTCATCGGATTCGGTAATC 460 501 1788 Antisense
Sequence Source Affymetrix Proprietary Database