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[187494_at]

Description W03F9.1 /REP_DB=WormBase Gene ID /WP=CE21254 /TR=SW:O16999 /GB=AAG24206.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 57.6
(-3)
P 		94.6
(3)
A 		91.4
(2.5)
A 		69.2
(-1.1)
M 		37
B 106.7
(1)
P 		123.3
(3)
A 		90.4
(-1.1)
A 		74.7
(-3)
A 		49
C 85.2
(0.1)
A 		74
(-1.7)
A 		65.7
(-3)
A 		103.7
(3)
A 		38
avr 83.2
(-2.7) 		97.3
(3) 		82.5
(-3) 		82.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 74.1
(-1.5)
A 		50.3
(-2.3)
A 		31.6
(-2.9)
A 		27.5
(-3)
A 		27.1
(-3)
A 		218.9
(3)
P 		192
B 60
(-1.4)
P 		65.7
(-1.2)
A 		27.5
(-2.6)
A 		15.4
(-3)
A 		36.3
(-2.3)
A 		182.8
(3)
P 		167
C 73.1
(-0.5)
A 		25
(-2.2)
A 		26.6
(-2.2)
A 		31.1
(-2)
A 		3.2
(-3)
A 		172.5
(3)
P 		169
avr 69.1
(-1.3) 		47
(-2.1) 		28.6
(-2.8) 		24.7
(-2.9) 		22.2
(-3) 		191.4
(3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21
(1.7)
P 		20.5
(1.5)
A 		23.9
(3)
A 		10.1
(-3)
M 		14
B 34
(3)
P 		30.5
(1.8)
A 		20.9
(-1.3)
A 		15.9
(-3)
A 		18
C 28.2
(3)
A 		21.3
(-0.9)
A 		22.9
(0)
A 		17.5
(-3)
A 		11
avr 27.7
(3) 		24.1
(1.4) 		22.6
(0.7) 		14.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 13.7
(-2.1)
A 		17.9
(-1.6)
A 		6.9
(-3)
A 		7
(-3)
A 		8.2
(-2.8)
A 		53.3
(3)
P 		46
B 20.9
(-1.4)
P 		21.9
(-1.3)
A 		6.7
(-2.8)
A 		4.1
(-3)
A 		14.8
(-2)
A 		68.2
(3)
P 		64
C 27.1
(-0.2)
A 		7.6
(-2.3)
A 		6.8
(-2.4)
A 		6.3
(-2.4)
A 		1
(-3)
A 		57.8
(3)
P 		57
avr 20.6
(-1.4) 		15.8
(-1.9) 		6.8
(-2.9) 		5.8
(-3) 		8
(-2.8) 		59.8
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15092
Sequence Type Exemplar sequence
Representative Public ID W03F9.1 NCBI
Target Description W03F9.1 /REP_DB=WormBase Gene ID /WP=CE21254 /TR=SW:O16999 /GB=AAG24206.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070737 NCBI Caenorhabditis elegans W03F9.1 (W03F9.1) mRNA, complete cds. 11/11 None
SNAP00000001162 ENSEMBL cdna:SNAP chromosome:CEL140:V:124206:127779:-1 11/11 None
GENEFINDER00000001177 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:124266:126477:-1 11/11 None
W03F9.1 ENSEMBL cdna:known chromosome:CEL140:V:123874:126573:-1 gene:W03F9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:124205-126477(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03F9.1
Entrez Gene 189162 Entrez gene
SwissProt O16999 EMBL-EBI
WormBase CE21254 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249888_S_AT zinc finger (ZPR1-type) family protein at
CANINE:1605188_S_AT similar to zinc finger protein 259 cfa
CANINE_2:CFA.1848.1.S1_AT similar to zinc finger protein 259 cfa
CANINE_2:CFAAFFX.20691.1.S1_S_AT similar to zinc finger protein 259 cfa
DROSOPHILA_2:1633381_AT dm
DROSGENOME1:142846_AT dm
HU35KSUBB:RC_T23539_AT zinc finger protein 259 hs
U133_X3P:G4508020_3P_AT zinc finger protein 259 hs
U133_X3P:HS.211509.0.S1_3P_S_AT zinc finger protein 259 hs
HG-U133A_2:217185_S_AT zinc finger protein 259 hs
HG-U133_PLUS_2:217185_S_AT zinc finger protein 259 hs
HG-U133A:217185_S_AT zinc finger protein 259 hs
HG-U95AV2:31633_G_AT zinc finger protein 259 hs
HG-U95AV2:32518_AT zinc finger protein 259 hs
HG-U95E:80846_AT zinc finger protein 259 hs
PLASMODIUM_ANOPHELES:200054_AT zinc finger protein 259 hs
HG-U133_PLUS_2:200054_AT zinc finger protein 259 hs
HG-U133A:200054_AT zinc finger protein 259 hs
HG-U133B:200054_AT zinc finger protein 259 hs
HG-FOCUS:200054_AT zinc finger protein 259 hs
HG-U133A_2:200054_AT zinc finger protein 259 hs
U133_X3P:200054_AT zinc finger protein 259 hs
HG-U95D:88555_AT Zinc finger protein 259 hs
MU11KSUBA:U41287_S_AT zinc finger protein 259 mm
MG-U74AV2:103096_AT zinc finger protein 259 mm
MG-U74AV2:161881_F_AT zinc finger protein 259 mm
MOE430A:1419281_A_AT zinc finger protein 259 mm
MOUSE430A_2:1419281_A_AT zinc finger protein 259 mm
MOUSE430_2:1419281_A_AT zinc finger protein 259 mm
MOE430A:1428294_AT zinc finger protein 259 mm
MOUSE430A_2:1428294_AT zinc finger protein 259 mm
MOUSE430_2:1428294_AT zinc finger protein 259 mm
RG-U34C:RC_AI237710_AT similar to zinc finger protein rn
RAE230B:1395833_AT similar to zinc finger protein rn
RAT230_2:1395833_AT similar to zinc finger protein rn
RAE230B:1391307_AT similar to zinc finger protein rn
RAT230_2:1391307_AT similar to zinc finger protein rn
RAE230B:1383625_A_AT similar to zinc finger protein rn
RAT230_2:1383625_A_AT similar to zinc finger protein rn
RAE230B:1393105_AT similar to zinc finger protein rn
RAT230_2:1393105_AT similar to zinc finger protein rn
YEAST_2:1771789_AT Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p) Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503138 W03F9.1 [Caenorhabditis elegans] gb|AAG24206.1| Hypothetical protein W03F9.1 [Caenorhabditis elegans] sp|O16999|ZPR1_CAEEL Zinc-finger protein ZPR1 homolog 0.0
blast CAE62365 Hypothetical protein CBG06449 [Caenorhabditis briggsae] 0.0
blast NP_503139 W03F9.2a [Caenorhabditis elegans] gb|AAG24200.1| Hypothetical protein W03F9.2a [Caenorhabditis elegans] 1.0E-136
blast AAF46456 CG9060-PA [Drosophila melanogaster] ref|NP_572532.1| CG9060-PA [Drosophila melanogaster] gb|AAK93313.1| LD37736p [Drosophila melanogaster] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.1E-101
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.6E-96
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.1E-101
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.6E-96
Sequence
Target Sequence 
>C. ELEGANS:187494_AT
tgaagccgactgacattccattcttccaaactgtcatcattatgtcattggcttgtgatc
gatgtggctacaagtcgaatgaagtcaaatcaggtggagcgattcgtgatcaggggtgcc
ggatgtcggtgaagttggagaaggatttggatttggcgagagatgttcttaaaactgata
catgtgctctgtcgatccctgagattgatctggaagtcggtggaaatgcgttgtgtgggc
ggtttactactattgagggattgctgacggctacgaaggagcagttggatgctcaatcct
cattcttcatgggagattcggctcaaaccggtgaaaaaagcgccgtaaccacattcctgg
agaagctcgacgacatcatcgctcttcgtctcccggctacaattatcctcgacgatccga
caggctgcagctacgtgcagagtctcacggctccaatggacgatccacgactgacaaaag
agttctacacacggacctacgagcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCGACTGACATTCCATTCTT 42 575 785 Antisense
TTCCATTCTTCCAAACTGTCATCAT 329 701 800 Antisense
GGAGCGATTCGTGATCAGGGGTGCC 216 521 880 Antisense
ACTGATACATGTGCTCTGTCGATCC 296 97 958 Antisense
GTTGTGTGGGCGGTTTACTACTATT 568 433 1014 Antisense
GTTGGATGCTCAATCCTCATTCTTC 2 437 1068 Antisense
GCCGTAACCACATTCCTGGAGAAGC 336 283 1126 Antisense
CGGCTACAATTATCCTCGACGATCC 573 51 1178 Antisense
CTACGTGCAGAGTCTCACGGCTCCA 5 227 1215 Antisense
TCACGGCTCCAATGGACGATCCACG 384 627 1229 Antisense
TTCTACACACGGACCTACGAGCAGA 153 689 1267 Antisense
Sequence Source Affymetrix Proprietary Database