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[187492_at]

Description C02F5.4 /REP_DB=WormBase Gene ID /WP=CE00040 /TR=SW:P34281 /GB=AAA27919.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 93      6grp_total > 86      4grp_total > 13      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 385.2
(-0.8)
P 		364
(-1.3)
P 		292.3
(-3)
P 		549.3
(3)
P 		257
B 432.8
(1.3)
P 		303.4
(-3)
P 		352.9
(-1.4)
P 		484.5
(3)
P 		181
C 443.8
(0.2)
P 		359.4
(-2.2)
P 		332
(-3)
P 		538.7
(3)
P 		207
avr 420.6
(-0.1) 		342.3
(-2.5) 		325.7
(-3) 		524.2
(3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 392.8
(-1.4)
P 		340.5
(-2.5)
P 		315.1
(-3)
P 		463
(0.1)
P 		467.9
(0.2)
P 		604.2
(3)
P 		289
B 352.9
(-2.9)
P 		349
(-3)
P 		446.9
(-1.3)
P 		423.4
(-1.7)
P 		492.2
(-0.6)
P 		701.2
(3)
P 		352
C 321.3
(-3)
P 		388.3
(-2)
P 		345.5
(-2.6)
P 		521.6
(0)
P 		515.4
(-0.1)
P 		716.4
(3)
P 		395
avr 355.7
(-3) 		359.3
(-2.9) 		369.2
(-2.7) 		469.3
(-0.9) 		491.8
(-0.4) 		673.9
(3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 140.3
(3)
P 		79
(-2.8)
P 		76.4
(-3)
P 		80.4
(-2.6)
P 		64
B 138
(3)
P 		74.9
(-3)
P 		81.8
(-2.3)
P 		103.2
(-0.3)
P 		63
C 146.9
(3)
P 		103.3
(-1.7)
P 		115.7
(-0.3)
P 		90.8
(-3)
P 		56
avr 141.7
(3) 		85.7
(-3) 		91.3
(-2.4) 		91.5
(-2.4) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 72.4
(-2.7)
P 		121.1
(1)
P 		68.6
(-3)
P 		117.4
(0.7)
P 		141.2
(2.5)
P 		147.1
(3)
P 		79
B 122.8
(-2.4)
P 		116.2
(-2.7)
P 		108.5
(-3)
P 		112.1
(-2.9)
P 		200
(0.6)
P 		261.5
(3)
P 		153
C 119.1
(-1.8)
P 		118.5
(-1.8)
P 		87.9
(-3)
P 		104.9
(-2.3)
P 		166.8
(0.1)
P 		239.8
(3)
P 		152
avr 104.8
(-2.2) 		118.6
(-1.6) 		88.3
(-3) 		111.5
(-1.9) 		169.3
(0.8) 		216.1
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7308
Sequence Type Exemplar sequence
Representative Public ID C02F5.4 NCBI
Target Description C02F5.4 /REP_DB=WormBase Gene ID /WP=CE00040 /TR=SW:P34281 /GB=AAA27919.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066406 NCBI Caenorhabditis elegans C02F5.4 (C02F5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000031525 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8244361:8245540:1 11/11 None
C02F5.4 ENSEMBL cdna:known chromosome:CEL140:III:8244359:8245649:1 gene:C02F5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031509 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8244356-8245536(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F5.4
Entrez Gene 176162 Entrez gene
WormBase CE38771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27919 Hypothetical protein C02F5.4 [Caenorhabditis elegans] 1.0E-177
blast NP_498807 C02F5.4 [Caenorhabditis elegans] sp|P34281|YKK4_CAEEL Hypothetical protein C02F5.4 in chromosome III 1.0E-146
blast CAE56932 Hypothetical protein CBG24777 [Caenorhabditis briggsae] 1.0E-145
blast AAA27919 Hypothetical protein C02F5.4 [Caenorhabditis elegans] 1.0E-133
blast NP_498807 C02F5.4 [Caenorhabditis elegans] sp|P34281|YKK4_CAEEL Hypothetical protein C02F5.4 in chromosome III 1.0E-112
blast CAE56932 Hypothetical protein CBG24777 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR006903 EMBL-EBI Protein of unknown function DUF618 9.3E-43
Sequence
Target Sequence 
>C. ELEGANS:187492_AT
gcgagaaagacttgcccacaattcaaggacgaattttttcccgcaatagaaagttctttc
aggcatgcaatcgagttgaaaaatgcaaaagaagtggaacatgcaattggtaaactgatc
aatgtatggaaagatcgtcagatattcactccatcacaatgcaaacggcttcatgaagtt
catcaacaagttaagctatctggaagcttcccaacacccgcagttgcgaacaaggaacat
ggaaagtcagttcgaagttcgcaagaagcacagtctctgttggtccaaaatgaagaagct
cttccgatgctggaggaatatgttaaaaggctgaaaaacgagacaaatgaacgcgaaact
ctcgaatcgaacttgaatatgcttatagaaaatgttagaatgagcattgaacatcacgag
aaattgtgcagagaagttaagcgtagagaagatcgaatcaaggcagatttgttagaggtt
gaaaaaacattcgaatcgttgccagatttggctgctgagatgccaaatgcaccattgcca
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGAAAGACTTGCCCACAATTCA 638 289 223 Antisense
TCAAGGACGAATTTTTTCCCGCAAT 22 633 245 Antisense
GAAAGTTCTTTCAGGCATGCAATCG 34 361 271 Antisense
GATCGTCAGATATTCACTCCATCAC 125 419 355 Antisense
CCATCACAATGCAAACGGCTTCATG 201 271 373 Antisense
AGCTATCTGGAAGCTTCCCAACACC 75 79 416 Antisense
TCCCAACACCCGCAGTTGCGAACAA 461 595 431 Antisense
GAAGCACAGTCTCTGTTGGTCCAAA 425 341 487 Antisense
AAGAAGCTCTTCCGATGCTGGAGGA 309 153 515 Antisense
GAATCGTTGCCAGATTTGGCTGCTG 644 329 715 Antisense
GATGCCAAATGCACCATTGCCAACA 303 415 741 Antisense
Sequence Source Affymetrix Proprietary Database