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[187491_at]

Description Y110A2AL.1 /REP_DB=WormBase Gene ID /WP=CE23226 /TR=Q9N495 /GB=AAF60401.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2
(-3)
A 		3
(-1.1)
A 		2.9
(-1.3)
A 		5.2
(3)
A 		3
B 1.9
(-3)
A 		12.8
(3)
A 		2.7
(-2.6)
A 		2.2
(-2.8)
A 		11
C 4.8
(0.7)
A 		6.6
(3)
A 		1.9
(-3)
A 		2.2
(-2.6)
A 		5
avr 2.9
(-2.5) 		7.5
(3) 		2.5
(-3) 		3.2
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 31.3
(3)
A 		2
(-3)
A 		4.5
(-2.5)
A 		3.9
(-2.6)
A 		2.9
(-2.8)
A 		2.2
(-3)
A 		29
B 1.8
(-3)
A 		3.3
(-1.9)
A 		5.5
(-0.2)
A 		9.8
(3)
A 		1.9
(-2.9)
A 		2.6
(-2.4)
A 		8
C 7.8
(2.5)
A 		1.7
(-3)
A 		2.4
(-2.4)
A 		8.4
(3)
A 		4.7
(-0.3)
A 		2.4
(-2.4)
A 		7
avr 13.6
(3) 		2.3
(-3) 		4.1
(-2) 		7.4
(-0.3) 		3.2
(-2.5) 		2.4
(-2.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.8
(3)
A 		0
B 0.6
(-2.8)
A 		3.2
(3)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		3
C 1.6
(1.8)
A 		1.9
(3)
A 		0.7
(-1.8)
A 		0.4
(-3)
A 		2
avr 1
(-1.2) 		1.9
(3) 		0.7
(-2.5) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.8
(3)
A 		0.7
(-2.8)
A 		1
(-2.4)
A 		1
(-2.4)
A 		0.9
(-2.5)
A 		0.5
(-3)
A 		5
B 0.6
(-3)
A 		1.1
(-1.5)
A 		1.3
(-0.9)
A 		2.6
(3)
A 		0.8
(-2.4)
A 		1
(-1.8)
A 		2
C 2.9
(3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		1.7
(0)
A 		1.5
(-0.5)
A 		0.8
(-2.3)
A 		2
avr 3.1
(3) 		0.8
(-3) 		1
(-2.5) 		1.8
(-0.4) 		1.1
(-2.2) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4410
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.1 NCBI
Target Description Y110A2AL.1 /REP_DB=WormBase Gene ID /WP=CE23226 /TR=Q9N495 /GB=AAF60401.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061989 NCBI Caenorhabditis elegans Y110A2AL.1 (Y110A2AL.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036295 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2875104:2876616:1 11/11 None
Y110A2AL.1 ENSEMBL cdna:known chromosome:CEL140:II:2875104:2876616:1 gene:Y110A2AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2875102-2876615(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.1
Entrez Gene 190934 Entrez gene
SwissProt Q9N495 EMBL-EBI
WormBase CE23226 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6298 mismatch repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3684 damaged DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60401 Hypothetical protein Y110A2AL.1 [Caenorhabditis elegans] ref|NP_494390.1| Y110A2AL.1 [Caenorhabditis elegans] 4.0E-77
blast AAF60396 Hypothetical protein Y110A2AL.10 [Caenorhabditis elegans] ref|NP_494389.1| Y110A2AL.10 [Caenorhabditis elegans] 2.0E-26
blast AAB66053 Hypothetical protein F02E11.4 [Caenorhabditis elegans] ref|NP_494494.1| F02E11.4 [Caenorhabditis elegans] 5.0E-22
Sequence
Target Sequence 
>C. ELEGANS:187491_AT
aaaatgcatcaacgtggcgccaagcggcatccggaggatgaagaaaattcaccaaatgga
aatcgcgcagcttttcgagtaccgtaggaattgcctgggagagaagcgaacagctgtgga
aaatgtcatcaatgcaaaagtggtcgcttggaacctggcagtggtccgtaggcgacacta
cttcgacctgcacggaatgacgccgcaaggagccgtcgactttgtggctcagatcgttga
agggaggaggccaggctatataaaactcgaaactggacgcggcaaccattccaaggacaa
cattccggcgattcaaaaccggctgcttcaggattttggcaatctttccggatttcaaat
cgccatcgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCATCAACGTGGCGCCAAGC 160 133 33 Antisense
GGAAATCGCGCAGCTTTTCGAGTAC 336 527 90 Antisense
CTTGGAACCTGGCAGTGGTCCGTAG 236 213 179 Antisense
TACTTCGACCTGCACGGAATGACGC 682 643 211 Antisense
GAATGACGCCGCAAGGAGCCGTCGA 266 331 227 Antisense
AGCCGTCGACTTTGTGGCTCAGATC 159 83 243 Antisense
TCGAAACTGGACGCGGCAACCATTC 504 597 299 Antisense
GGACAACATTCCGGCGATTCAAAAC 103 527 327 Antisense
AAAACCGGCTGCTTCAGGATTTTGG 136 131 347 Antisense
GATTTTGGCAATCTTTCCGGATTTC 657 429 364 Antisense
TCCGGATTTCAAATCGCCATCGACC 282 595 379 Antisense
Sequence Source Affymetrix Proprietary Database