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[187490_s_at]

Description EEED8.9 /REP_DB=WormBase Gene ID /WP=CE01893 /TR=SW:Q09298 /GB=AAC46769.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 403.1
(3)
P 		248.1
(-3)
P 		296.1
(-1.1)
P 		359.8
(1.3)
P 		155
B 441.2
(3)
P 		288.6
(-3)
P 		375.2
(0.4)
P 		409.9
(1.8)
P 		153
C 399.9
(3)
P 		278.3
(-3)
P 		341.8
(0.1)
P 		379.9
(2)
P 		122
avr 414.7
(3) 		271.7
(-3) 		337.7
(-0.2) 		383.2
(1.7) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 189.1
(-3)
P 		278.2
(-1.4)
P 		339.9
(-0.3)
P 		427.1
(1.3)
P 		287.5
(-1.2)
P 		520.7
(3)
P 		332
B 298.3
(-3)
P 		330.5
(-2.3)
P 		328.1
(-2.4)
P 		316.4
(-2.6)
P 		374.7
(-1.4)
P 		592
(3)
P 		294
C 368.8
(0.1)
P 		282.3
(-2.3)
P 		308.5
(-1.6)
P 		257.5
(-3)
P 		474.2
(3)
P 		420.5
(1.5)
P 		217
avr 285.4
(-3) 		297
(-2.7) 		325.5
(-1.9) 		333.7
(-1.7) 		378.8
(-0.5) 		511.1
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 146.8
(3)
P 		53.9
(-2.9)
P 		77.4
(-1.4)
P 		52.7
(-3)
P 		94
B 140.7
(3)
P 		71.3
(-3)
P 		86.9
(-1.7)
P 		87.3
(-1.6)
P 		69
C 132.4
(3)
P 		80
(-1.6)
P 		119.1
(1.8)
P 		64.1
(-3)
P 		68
avr 140
(3) 		68.4
(-3) 		94.5
(-0.8) 		68
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 34.9
(-3)
P 		98.9
(1.2)
P 		74
(-0.4)
P 		108.3
(1.8)
P 		86.8
(0.4)
P 		126.8
(3)
P 		92
B 103.8
(-2)
P 		110
(-1.7)
P 		79.7
(-3)
P 		83.8
(-2.8)
P 		152.3
(0.1)
P 		220.8
(3)
P 		141
C 136.7
(2)
P 		86.1
(-1)
P 		78.5
(-1.4)
P 		51.8
(-3)
P 		153.4
(3)
P 		140.8
(2.3)
P 		102
avr 91.8
(-2) 		98.3
(-1.5) 		77.4
(-3) 		81.3
(-2.7) 		130.8
(0.8) 		162.8
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187490_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4726
Sequence Type Exemplar sequence
Representative Public ID EEED8.9 NCBI
Target Description EEED8.9 /REP_DB=WormBase Gene ID /WP=CE01893 /TR=SW:Q09298 /GB=AAC46769.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062615 NCBI Caenorhabditis elegans EEED8.16 (EEED8.16) mRNA, complete cds. 11/11 None
SNAP00000023167 ENSEMBL cdna:SNAP chromosome:CEL140:II:5390407:5393156:-1 11/11 None
GENEFINDER00000023183 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5388887:5395649:-1 11/11 None
EEED8.16 ENSEMBL cdna:known chromosome:CEL140:II:5390229:5393160:-1 gene:EEED8.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5390404-5395647(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl EEED8.16
Entrez Gene 173917 Entrez gene
SwissProt Q95QN6 EMBL-EBI
WormBase CE28903 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17220_AT zinc finger (ubiquitin-hydrolase) domain-containing protein at
ATH1-121501:267632_AT zinc finger (ubiquitin-hydrolase) domain-containing protein at
CANINE:1604173_AT similar to BRCA1 associated protein cfa
CANINE_2:CFA.19691.1.S1_AT similar to BRCA1 associated protein cfa
CANINE_2:CFAAFFX.13622.1.S1_AT similar to BRCA1 associated protein cfa
DROSOPHILA_2:1639812_AT dm
DROSGENOME1:152087_AT dm
HG-U133_PLUS_2:213473_AT BRCA1 associated protein hs
HG-U133A_2:213473_AT BRCA1 associated protein hs
HG-U133A:213473_AT BRCA1 associated protein hs
HU35KSUBD:RC_AA256308_AT BRCA1 associated protein hs
HG-U133A:209923_S_AT BRCA1 associated protein hs
HG-U133_PLUS_2:209923_S_AT BRCA1 associated protein hs
HG-U133A_2:209923_S_AT BRCA1 associated protein hs
HG-U133A:209922_AT BRCA1 associated protein hs
HG-U133_PLUS_2:209922_AT BRCA1 associated protein hs
HG-U133A_2:209922_AT BRCA1 associated protein hs
U133_X3P:G3252871_3P_A_AT BRCA1 associated protein hs
U133_X3P:HS.122764.1.S1_3P_S_AT BRCA1 associated protein hs
HG-U95AV2:35500_AT BRCA1 associated protein hs
HG-U95C:63075_S_AT BRCA1 associated protein hs
HG-U133A_2:217708_X_AT BRCA1 associated protein hs
HG-U133_PLUS_2:217708_X_AT BRCA1 associated protein hs
HG-U133A:217708_X_AT BRCA1 associated protein hs
HG-FOCUS:41512_AT BRCA1 associated protein hs
HG-U133_PLUS_2:41512_AT BRCA1 associated protein hs
HG-U133A_2:41512_AT BRCA1 associated protein hs
HG-U133A:41512_AT BRCA1 associated protein hs
HG-U95AV2:41512_AT BRCA1 associated protein hs
HU35KSUBC:RC_N69998_AT BRCA1 associated protein hs
U133_X3P:217708_3P_X_AT BRCA1 associated protein hs
U133_X3P:HS.172895.0.A1_3P_AT BRCA1 associated protein hs
U133_X3P:HS.172895.0.A1_3P_X_AT BRCA1 associated protein hs
MG-U74AV2:160113_AT BRCA1 associated protein mm
MG-U74BV2:165205_R_AT BRCA1 associated protein mm
MOE430A:1416738_AT BRCA1 associated protein mm
MOUSE430A_2:1416738_AT BRCA1 associated protein mm
MOUSE430_2:1416738_AT BRCA1 associated protein mm
MOE430A:1416739_A_AT BRCA1 associated protein mm
MOUSE430A_2:1416739_A_AT BRCA1 associated protein mm
MOUSE430_2:1416739_A_AT BRCA1 associated protein mm
MG-U74BV2:111625_AT BRCA1 associated protein, mRNA (cDNA clone MGC:47099 IMAGE:3599718) mm
MU19KSUBB:TC30460_AT BRCA1 associated protein, mRNA (cDNA clone MGC:47099 IMAGE:3599718) mm
MU19KSUBC:TC36923_AT BRCA1 associated protein, mRNA (cDNA clone MGC:47099 IMAGE:3599718) mm
Protein Similarities
Method ID Description E-Value
blast AAK93844 Hypothetical protein EEED8.16 [Caenorhabditis elegans] ref|NP_495016.1| EEED8.16 [Caenorhabditis elegans] sp|Q95QN6|YQOE_CAEEL Hypothetical RING finger protein EEED8.16 in chromosome II 0.0
blast CAE59093 Hypothetical protein CBG02385 [Caenorhabditis briggsae] 0.0
blast AAK93845 Hypothetical protein EEED8.9 [Caenorhabditis elegans] ref|NP_495017.1| PINK (PTEN-induced kinase) homolog family member (pink-1) [Caenorhabditis elegans] sp|Q09298|YQO9_CAEEL Putative serine/threonine-protein kinase EEED8.9 0.0
blast BAD92115.1 BRCA1 associated protein variant [Homo sapiens] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 9.8E-35
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.5E-14
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 9.8E-35
Pfam IPR000719 EMBL-EBI Protein kinase 0.0029
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-11
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 6.7E-20
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.5E-14
Sequence
Target Sequence 
>C. ELEGANS:187490_S_AT
gaatcgaatgcgagctttgatgacaaaaaccaaaagggtggagacaagcttgagggaatc
aaactcgaatacactctactcctgaccagtcaacttgaggatcaacggaaatattttgaa
ggtctacgtcacgatatggagcaaacgatgtcaaaaatggagaaaactgcttatgctcaa
gtagagaatctcgagcatcaactgacggaacgatcaactgaattgaaatcattaaaagga
gatttagatgatactgtgacggcgagaaaagtggcagagaaacgagcaacgcagacaaat
gaaaaagtgaataagcttgcaaatgagttgaaagatgaacgtgaaataaatcaaatgttg
agaaaagatcagcaagtgtggaaaggtcaagtggaaaagcttattgaaagtcagaaaact
gctcgaaccgagtatgaaaagaaaatcgaagatcttcagtcacaagtcaatgatcttttg
atgcattttgaaactcaaaataagctgaaagagcagttggatgctggaaaaataactcaa
gaggaaataactgaaagtcaagttgaactcgattcgtcgtcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGAATGCGAGCTTTGATGACA 21 331 3109 Antisense
CAAACTCGAATACACTCTACTCCTG 350 191 3168 Antisense
CTCTACTCCTGACCAGTCAACTTGA 524 229 3182 Antisense
GAAGGTCTACGTCACGATATGGAGC 66 333 3226 Antisense
GAAAACTGCTTATGCTCAAGTAGAG 104 355 3270 Antisense
GAGAATCTCGAGCATCAACTGACGG 439 391 3292 Antisense
TAGATGATACTGTGACGGCGAGAAA 535 653 3353 Antisense
GGCAGAGAAACGAGCAACGCAGACA 206 535 3381 Antisense
GTCAGAAAACTGCTCGAACCGAGTA 554 463 3518 Antisense
GAAGATCTTCAGTCACAAGTCAATG 107 339 3556 Antisense
AAGTTGAACTCGATTCGTCGTCCTC 151 151 3668 Antisense
Sequence Source Affymetrix Proprietary Database