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[187487_at]

Description B0304.7 /REP_DB=WormBase Gene ID /WP=CE02429 /TR=SW:Q10936 /GB=AAK31391.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 03      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 6.2
(-2.9)
A 		5.4
(-3)
A 		6.2
(-2.9)
A 		95.1
(3)
P 		90
B 9.6
(-2.5)
A 		3.6
(-3)
A 		3.4
(-3)
A 		81
(3)
A 		78
C 18.4
(-2)
A 		7.7
(-2.7)
A 		3.6
(-3)
A 		95.7
(3)
P 		92
avr 11.4
(-2.5) 		5.6
(-2.9) 		4.4
(-3) 		90.6
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.8
(-0.5)
A 		2
(-3)
A 		4.5
(-1.4)
A 		5.1
(-1)
A 		11.1
(3)
A 		4.4
(-1.4)
A 		9
B 19.6
(3)
A 		11.6
(0)
A 		7.6
(-1.4)
A 		6.4
(-1.9)
A 		3.4
(-3)
A 		4.6
(-2.6)
A 		16
C 4.4
(-2.5)
A 		21
(3)
A 		2.8
(-3)
A 		5
(-2.3)
A 		3.8
(-2.7)
A 		7.7
(-1.4)
A 		18
avr 9.9
(1.5) 		11.5
(3) 		5
(-3) 		5.5
(-2.5) 		6.1
(-2) 		5.6
(-2.4) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.2
(-2.5)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		13.9
(3)
P 		13
B 3.1
(-2.2)
A 		0.9
(-3)
A 		0.8
(-3)
A 		17.3
(3)
A 		17
C 6.1
(-1)
A 		2.2
(-2.6)
A 		1.2
(-3)
A 		16.1
(3)
P 		15
avr 3.8
(-1.9) 		1.4
(-2.9) 		1.2
(-3) 		15.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.1
(-2.1)
A 		0.7
(-3)
A 		1
(-2.3)
A 		1.3
(-1.7)
A 		3.4
(3)
A 		1.1
(-2.1)
A 		3
B 6.8
(3)
A 		3.8
(-0.3)
A 		1.9
(-2.4)
A 		1.7
(-2.7)
A 		1.4
(-3)
A 		1.7
(-2.7)
A 		5
C 1.6
(-2.1)
A 		6.4
(3)
A 		0.7
(-3)
A 		1
(-2.7)
A 		1.2
(-2.5)
A 		2.6
(-1)
A 		6
avr 3.2
(2) 		3.6
(3) 		1.2
(-3) 		1.3
(-2.8) 		2
(-1) 		1.8
(-1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4362
Sequence Type Exemplar sequence
Representative Public ID B0304.7 NCBI
Target Description B0304.7 /REP_DB=WormBase Gene ID /WP=CE02429 /TR=SW:Q10936 /GB=AAK31391.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062402 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-36) (sra-36) mRNA, complete cds. 11/11 None
GENEFINDER00000018309 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4538975:4543671:-1 11/11 None
B0304.9 ENSEMBL cdna:known chromosome:CEL140:II:4538975:4540718:-1 gene:B0304.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4538973-4543654(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0304.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAZ82853 Serpentine receptor, class a (alpha) protein 36, isoform b [Caenorhabditis elegans] 0.0
blast AAP86621 Serpentine receptor, class a (alpha) protein 36, isoform a [Caenorhabditis elegans] ref|NP_494803.2| Serpentine Receptor, class A (alpha) family member (sra-36) [Caenorhabditis elegans] 1.0E-167
blast AAZ82853 Serpentine receptor, class a (alpha) protein 36, isoform b [Caenorhabditis elegans] 1.0E-137
blast AAP86621 Serpentine receptor, class a (alpha) protein 36, isoform a [Caenorhabditis elegans] ref|NP_494803.2| Serpentine Receptor, class A (alpha) family member (sra-36) [Caenorhabditis elegans] 1.0E-136
blast CAE67863 Hypothetical protein CBG13455 [Caenorhabditis briggsae] 1.0E-118
blast CAE67863 Hypothetical protein CBG13455 [Caenorhabditis briggsae] 1.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.5E-10
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 2.5E-5
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 6.7E-11
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 2.0E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494803.2 5 34-56,101-123,145-167,202-224,239-261
B0304.9 5 34-56,101-123,145-167,202-224,239-261
GENEFINDER00000018309 11 35-54,67-89,127-149,173-195,210-232,362-384,399-421,442-464,486-508,543-565,580-602
Sequence
Target Sequence 
>C. ELEGANS:187487_AT
gatcttattaactctggaacattgaacattatgacttttataatgtctgttattattaca
agtgcgatcaggccgccatcatattctcaatacaataatccaaattgcttccaacaaatt
tatcccgaaatggaaactataaattacctaattcatttaatgattggatttgatttgatt
tgttttccaatcaatttcttgataatgattagatatcgaaggaaatttttgaagtctcag
aacagtggtgattacaatttaaaatctcgatataataacaaaagtaacatgaactcatca
attatagtgtccttcatttcttttgtgcaaactcttatctatacgatttatattcttgga
ttctttattgtattaaacatttacgtaaatgcagatggattgttttatggaaataatgtt
gcgctttggttttatagcttcccgatagctggccttgcacttccttgttcgataatcctt
tcatacaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTATTAACTCTGGAACATTGA 220 413 1177 Antisense
TTACAAGTGCGATCAGGCCGCCATC 60 683 1232 Antisense
GCCGCCATCATATTCTCAATACAAT 483 285 1248 Antisense
ATTGCTTCCAACAAATTTATCCCGA 181 5 1280 Antisense
GAACTCATCAATTATAGTGTCCTTC 513 349 1467 Antisense
ATAGTGTCCTTCATTTCTTTTGTGC 127 23 1480 Antisense
TTGTGCAAACTCTTATCTATACGAT 152 709 1499 Antisense
GTTGCGCTTTGGTTTTATAGCTTCC 165 441 1594 Antisense
TTATAGCTTCCCGATAGCTGGCCTT 389 679 1608 Antisense
TTGCACTTCCTTGTTCGATAATCCT 279 699 1631 Antisense
GTTCGATAATCCTTTCATACACCGG 469 441 1643 Antisense
Sequence Source Affymetrix Proprietary Database