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[187486_at]

Description F40H6.4 /REP_DB=WormBase Gene ID /WP=CE01281 /TR=SW:Q20257 /GB=AAA62521.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 29      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 20.5
(-2.2)
A 		78.3
(3)
A 		11.2
(-3)
A 		15.7
(-2.6)
A 		67
B 84.6
(3)
A 		19
(-3)
A 		71.1
(1.8)
A 		52.3
(0)
A 		66
C 89.2
(0.9)
A 		53.5
(-0.9)
A 		9.9
(-3)
A 		133.4
(3)
M 		124
avr 64.8
(2.6) 		50.3
(0.2) 		30.7
(-3) 		67.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 82.3
(-0.6)
A 		38.4
(-2.1)
A 		70.9
(-1)
A 		10.9
(-3)
A 		139.5
(1.3)
M 		189.6
(3)
P 		179
B 58.7
(-2.9)
A 		63.2
(-2.6)
A 		57.1
(-3)
A 		90.2
(-1.1)
A 		86.7
(-1.3)
A 		159.2
(3)
P 		102
C 70.2
(0.3)
A 		52
(-0.7)
A 		14.4
(-2.7)
A 		88.9
(1.2)
A 		8.1
(-3)
A 		122.6
(3)
P 		115
avr 70.4
(-1.7) 		51.2
(-2.8) 		47.5
(-3) 		63.3
(-2.1) 		78.1
(-1.3) 		157.1
(3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 7.5
(-0.9)
A 		17
(3)
A 		2.9
(-2.8)
A 		2.3
(-3)
A 		15
B 27
(3)
A 		4.7
(-3)
A 		16.5
(0.2)
A 		11.1
(-1.3)
A 		22
C 29.5
(3)
A 		15.4
(-0.3)
A 		3.5
(-3)
A 		22.5
(1.4)
M 		26
avr 21.3
(3) 		12.4
(-0.9) 		7.6
(-3) 		12
(-1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 15.2
(-1.3)
A 		13.7
(-1.5)
A 		15.5
(-1.2)
A 		2.8
(-3)
A 		42.1
(2.4)
M 		46.2
(3)
P 		43
B 20.4
(-2.1)
A 		21.1
(-2.1)
A 		13.9
(-3)
A 		23.9
(-1.7)
A 		35.2
(-0.2)
A 		59.4
(3)
P 		46
C 26
(0.7)
A 		15.9
(-0.9)
A 		3.7
(-2.8)
A 		17.9
(-0.6)
A 		2.6
(-3)
A 		41
(3)
P 		38
avr 20.5
(-1.5) 		16.9
(-2.1) 		11
(-3) 		14.9
(-2.4) 		26.6
(-0.5) 		48.9
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7458
Sequence Type Exemplar sequence
Representative Public ID F40H6.4 NCBI
Target Description F40H6.4 /REP_DB=WormBase Gene ID /WP=CE01281 /TR=SW:Q20257 /GB=AAA62521.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065916 NCBI Caenorhabditis elegans T BoX family member (tbx-11) (tbx-11) mRNA, complete cds. 11/11 None
SNAP00000035888 ENSEMBL cdna:SNAP chromosome:CEL140:III:6045713:6046847:-1 11/11 None
GENEFINDER00000035897 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6045713:6046847:-1 11/11 None
F40H6.4 ENSEMBL cdna:known chromosome:CEL140:III:6045713:6046847:-1 gene:F40H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6045711-6046846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-11
Ensembl F40H6.4
Entrez Gene 185575 Entrez gene
SwissProt Q20257 EMBL-EBI
WormBase CE01281 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA62521 T box family protein 11 [Caenorhabditis elegans] ref|NP_498317.1| T BoX family member (tbx-11) [Caenorhabditis elegans] sp|Q20257|TBX11_CAEEL Putative T-box protein 1.0E-156
blast CAE56372 Hypothetical protein CBG24047 [Caenorhabditis briggsae] 3.0E-45
blast CAE60826 Hypothetical protein CBG04534 [Caenorhabditis briggsae] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.7E-108
Sequence
Target Sequence 
>C. ELEGANS:187486_AT
gatggcaacgcttcgtatgttcacttgctcacccagcacagatacattccagttctcacc
atctacgaaggagatcagctagtccataccgctcgtattccacacagccaattcatcagt
gtcactgcgtatcataaaggcgaactcaacaccttgaaaaccaataacaatccgtattca
actggatctcgtaaggatcgtcgtcgtgaacgtcaatctccagtctattcagaaggtaca
agctccgagaagagcatctcaccaccacctgccaagaaaatcaaggacatggcaccagcc
ctccctgactattcagttatttcaaaaccaaacctgctccagtctctgattttccccatg
atcgccgaacagccaagcacaagccaatcgcccccagctccaccagtgtttccattcaat
ccagacctccaaatgcaaatgctccagccatttatgctcccccaattcgggttcccatgt
ggattcccatctatcaatccattcatgaatccattcctcactccattcacttcaatgttc
ccaactcctaccgtaagtccagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCAACGCTTCGTATGTTCACT 432 407 373 Antisense
CACCCAGCACAGATACATTCCAGTT 303 201 402 Antisense
TCCAGTTCTCACCATCTACGAAGGA 612 589 420 Antisense
AGGAGATCAGCTAGTCCATACCGCT 591 55 441 Antisense
GTGAACGTCAATCTCCAGTCTATTC 491 479 578 Antisense
AATCAAGGACATGGCACCAGCCCTC 357 171 651 Antisense
ATTCAATCCAGACCTCCAAATGCAA 90 13 786 Antisense
TTCGGGTTCCCATGTGGATTCCCAT 162 651 838 Antisense
GATTCCCATCTATCAATCCATTCAT 388 433 854 Antisense
TCACTCCATTCACTTCAATGTTCCC 34 627 890 Antisense
CCAACTCCTACCGTAAGTCCAGACG 66 269 913 Antisense
Sequence Source Affymetrix Proprietary Database