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[187485_at]

Description B0563.6 /REP_DB=WormBase Gene ID /WP=CE07782 /TR=SW:Q11082 /GB=AAA68317.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 03      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 188.5
(2.3)
P 		86.8
(-3)
P 		87.8
(-2.9)
P 		201.5
(3)
P 		115
B 201.7
(3)
P 		134.6
(-1)
P 		100.5
(-3)
P 		140.2
(-0.6)
P 		101
C 183
(3)
P 		129.6
(-0)
P 		77.9
(-3)
P 		147.7
(1)
P 		105
avr 191.1
(3) 		117
(-1.3) 		88.7
(-3) 		163.1
(1.4) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 213.9
(3)
P 		177.8
(0.9)
P 		113
(-3)
P 		122.6
(-2.4)
P 		171.6
(0.5)
P 		116.5
(-2.8)
P 		101
B 193.8
(3)
P 		174
(1.9)
P 		122.5
(-0.8)
P 		159.9
(1.2)
P 		93
(-2.4)
P 		82.4
(-3)
P 		111
C 175.7
(0.2)
P 		170.5
(-0)
P 		142.8
(-1.1)
P 		250
(3)
P 		104.5
(-2.5)
P 		91.4
(-3)
P 		159
avr 194.5
(3) 		174.1
(1.7) 		126.1
(-1.2) 		177.5
(2) 		123
(-1.4) 		96.8
(-3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 68.6
(3)
P 		18.8
(-3)
P 		23
(-2.5)
P 		29.5
(-1.7)
P 		50
B 64.3
(3)
P 		33.3
(-1.5)
P 		23.3
(-3)
P 		29.9
(-2)
P 		41
C 60.6
(3)
P 		37.3
(-0.9)
P 		27.1
(-2.6)
P 		24.9
(-3)
P 		36
avr 64.5
(3) 		29.8
(-2.2) 		24.5
(-3) 		28.1
(-2.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 39.4
(-0.7)
P 		63.2
(3)
P 		24.6
(-3)
P 		31.1
(-2)
P 		51.8
(1.2)
P 		28.4
(-2.4)
P 		39
B 67.4
(3)
P 		57.9
(1.5)
P 		29.7
(-3)
P 		42.4
(-1)
P 		37.8
(-1.7)
P 		30.7
(-2.8)
P 		38
C 65.1
(3)
P 		52
(0.7)
P 		36.3
(-2)
P 		50.3
(0.4)
P 		33.8
(-2.4)
P 		30.6
(-3)
P 		35
avr 57.3
(2.9) 		57.7
(3) 		30.2
(-2.9) 		41.3
(-0.5) 		41.1
(-0.6) 		29.9
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16167
Sequence Type Exemplar sequence
Representative Public ID B0563.6 NCBI
Target Description B0563.6 /REP_DB=WormBase Gene ID /WP=CE07782 /TR=SW:Q11082 /GB=AAA68317.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171750(11), NM_171967(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171750 NCBI Caenorhabditis elegans B0563.6a (B0563.6) mRNA, complete cds. 11/11 None
NM_171967 NCBI Caenorhabditis elegans B0563.6b (B0563.6) mRNA, complete cds. 10/11 None
GENEFINDER00000037344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9140380:9144203:1 10/11 None
B0563.6a ENSEMBL cdna:known chromosome:CEL140:X:9137860:9145589:1 gene:B0563.6 11/11 None
B0563.6b.2 ENSEMBL cdna:known chromosome:CEL140:X:9140375:9144203:1 gene:B0563.6 10/11 None
B0563.6b.1 ENSEMBL cdna:known chromosome:CEL140:X:9140376:9144478:1 gene:B0563.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037329 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9142024-9144202(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0563.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68317 Hypothetical protein B0563.6a [Caenorhabditis elegans] ref|NP_741869.1| B0563.6a [Caenorhabditis elegans] sp|Q11082|YT66_CAEEL Probable G-protein coupled receptor B0563.6 0.0
blast AAM51506 Hypothetical protein B0563.6b [Caenorhabditis elegans] ref|NP_741870.2| B0563.6b [Caenorhabditis elegans] 0.0
blast CAE57279 Hypothetical protein CBG00182 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.2E-16
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.2E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741869.1 6 27-49,64-86,107-126,146-168,207-229,256-278
NP_741870.2 6 13-35,50-72,95-117,137-159,198-220,247-269
B0563.6a 6 27-49,64-86,107-126,146-168,207-229,256-278
B0563.6b.2 6 13-35,50-72,95-117,137-159,198-220,247-269
B0563.6b.1 6 13-35,50-72,95-117,137-159,198-220,247-269
GENEFINDER00000037344 6 13-35,50-72,95-117,137-159,198-220,247-269
Sequence
Target Sequence 
>C. ELEGANS:187485_AT
acttgtctgtaatattcctgctgctattaacttgttgctaattgacgagactctgaaaaa
gcggctcgactatcaaattttccgcgccgtggccaacattttagaaataacaaatcatgc
gtctcagttctacgtgttctgcgcatgctccacagactaccgtacaacatttcttcaaaa
gtttccatgcttcaaaacagactacgcgaaccgcgacagactccgttcgtttgttcgacg
aacgcagtctgtgatacaaaagcaaggaagcgtggagcacacgaccaactcaaaggtttg
gattatgtttaagaacaagtttcaacgtgactccctctcccatcattcccgaaaattttc
tcgtcacatgccaattgaacaggatactgtggacattcagctggcatccggagaacagag
taccagtggagaaatgtgtgaagccgacacccttatcaagtatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGTCTGTAATATTCCTGCTGCT 644 103 714 Antisense
AAGCGGCTCGACTATCAAATTTTCC 424 147 772 Antisense
GCGCCGTGGCCAACATTTTAGAAAT 328 287 797 Antisense
TCATGCGTCTCAGTTCTACGTGTTC 55 623 828 Antisense
GACTACCGTACAACATTTCTTCAAA 325 373 868 Antisense
CTACGCGAACCGCGACAGACTCCGT 562 225 915 Antisense
GAAGCGTGGAGCACACGACCAACTC 399 343 980 Antisense
GAACAAGTTTCAACGTGACTCCCTC 362 353 1026 Antisense
AAATTTTCTCGTCACATGCCAATTG 72 117 1066 Antisense
ACTGTGGACATTCAGCTGGCATCCG 235 97 1099 Antisense
AAGCCGACACCCTTATCAAGTATGG 74 149 1154 Antisense
Sequence Source Affymetrix Proprietary Database