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[187484_at]

Description B0252.5 /REP_DB=WormBase Gene ID /WP=CE02421 /TR=SW:Q10918 /GB=AAC46759.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 9.2
(-3)
A 		23.3
(3)
A 		13.9
(-1)
A 		11.3
(-2.1)
A 		14
B 18.6
(2.1)
A 		8.4
(-3)
A 		10.6
(-1.9)
A 		20.4
(3)
A 		12
C 6.6
(-3)
A 		6.8
(-3)
A 		7.5
(-2.9)
A 		45.7
(3)
A 		39
avr 11.5
(-2.7) 		12.8
(-2.2) 		10.7
(-3) 		25.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 4.5
(-3)
A 		6
(-3)
A 		67.3
(-1.3)
A 		73
(-1.2)
A 		156.4
(1.1)
A 		228.4
(3)
P 		224
B 27.1
(-2.3)
A 		10
(-3)
A 		42.7
(-1.7)
A 		39.8
(-1.8)
A 		157.4
(3)
A 		152.5
(2.8)
P 		147
C 4.4
(-3)
A 		82.2
(-0.4)
A 		5.4
(-3)
A 		55
(-1.3)
A 		89.4
(-0.1)
A 		182.4
(3)
P 		178
avr 12
(-3) 		32.7
(-2.3) 		38.5
(-2.1) 		55.9
(-1.5) 		134.4
(1.2) 		187.8
(3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.3
(-0.2)
A 		5.1
(3)
A 		3.6
(0.4)
A 		1.7
(-3)
A 		3
B 5.9
(3)
A 		2.1
(-3)
A 		2.5
(-2.4)
A 		4.4
(0.6)
A 		4
C 2.2
(-2.8)
A 		2
(-3)
A 		2.6
(-2.4)
A 		7.7
(3)
A 		6
avr 3.8
(0.2) 		3.1
(-2.3) 		2.9
(-3) 		4.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.1
(-2.9)
A 		14.7
(-1.5)
A 		18.5
(-1.1)
A 		47.2
(2.1)
A 		55.6
(3)
P 		55
B 9.4
(-2.4)
A 		3.3
(-3)
A 		10.4
(-2.3)
A 		10.5
(-2.3)
A 		64
(3)
A 		56.9
(2.3)
P 		61
C 1.6
(-3)
A 		25.1
(-0.6)
A 		1.4
(-3)
A 		11.1
(-2)
A 		28.9
(-0.2)
A 		61.1
(3)
P 		60
avr 3.9
(-3) 		10.2
(-2.3) 		8.8
(-2.5) 		13.4
(-1.9) 		46.7
(1.8) 		57.9
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5894
Sequence Type Exemplar sequence
Representative Public ID B0252.5 NCBI
Target Description B0252.5 /REP_DB=WormBase Gene ID /WP=CE02421 /TR=SW:Q10918 /GB=AAC46759.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063017 NCBI Caenorhabditis elegans B0252.5 (B0252.5) mRNA, complete cds. 11/11 None
SNAP00000013957 ENSEMBL cdna:SNAP chromosome:CEL140:II:6917875:6918722:-1 9/11 None
GENEFINDER00000013961 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6916980:6918851:-1 11/11 None
B0252.5 ENSEMBL cdna:known chromosome:CEL140:II:6916980:6918851:-1 gene:B0252.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013956 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6916975-6918847(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0252.5
Entrez Gene 181888 Entrez gene
SwissProt Q10918 EMBL-EBI
WormBase CE02421 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46759 Hypothetical protein B0252.5 [Caenorhabditis elegans] ref|NP_495418.1| B0252.5 [Caenorhabditis elegans] sp|Q10918|YT15_CAEEL Hypothetical protein B0252.5 in chromosome II 1.0E-162
blast AAC46759 Hypothetical protein B0252.5 [Caenorhabditis elegans] ref|NP_495418.1| B0252.5 [Caenorhabditis elegans] sp|Q10918|YT15_CAEEL Hypothetical protein B0252.5 in chromosome II 1.0E-152
blast AAC46759 Hypothetical protein B0252.5 [Caenorhabditis elegans] ref|NP_495418.1| B0252.5 [Caenorhabditis elegans] sp|Q10918|YT15_CAEEL Hypothetical protein B0252.5 in chromosome II 1.0E-105
blast CAE65995 Hypothetical protein CBG11186 [Caenorhabditis briggsae] 1.0E-66
blast CAE65995 Hypothetical protein CBG11186 [Caenorhabditis briggsae] 6.0E-61
Sequence
Target Sequence 
>C. ELEGANS:187484_AT
atcaaccatgcagctgcttacttccgagagcgtgctggagatctggactatcaagacgag
ccatccagcaagagtacctgccagaagacgttcactgtggtgaagagcgaggaaaaagaa
aagaagaagttggagcaatgtctcccgattcttctcaatattcgtgcccgtttcgctgaa
aacgagaagaacaaatcgtacagcatccacaaaagaaaccaaaatggtgcactcaaagct
ctctgcgatgagattgtcgaagaatcaacttatgtattgaacaatggacatccagtttct
tcggatttgattaaaaagattgccaatatcaatactctttcgagacaagttattgctaac
gagaccaaaatggaaaatcttgttcaggatgagtttgaacttgctgcatcaaagtcaaag
accagtgacaaggcaatcgcatgcagttttgttttgcgatgggcaactgaagactcgtat
gatcttccagcatataaaaacaacaaacgtcttcacttcgtcttaaacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACCATGCAGCTGCTTACTTCC 173 27 328 Antisense
TGCTTACTTCCGAGAGCGTGCTGGA 598 573 342 Antisense
CTATCAAGACGAGCCATCCAGCAAG 14 225 375 Antisense
GAGTACCTGCCAGAAGACGTTCACT 635 397 399 Antisense
TGGAGCAATGTCTCCCGATTCTTCT 21 549 458 Antisense
CGATTCTTCTCAATATTCGTGCCCG 114 249 473 Antisense
TTCGTGCCCGTTTCGCTGAAAACGA 81 695 488 Antisense
AAATGGTGCACTCAAAGCTCTCTGC 371 121 549 Antisense
GGACATCCAGTTTCTTCGGATTTGA 571 525 613 Antisense
AAGACTCGTATGATCTTCCAGCATA 668 153 797 Antisense
CGTCTTCACTTCGTCTTAAACTTGG 641 245 835 Antisense
Sequence Source Affymetrix Proprietary Database