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[187483_at]

Description B0416.7 /REP_DB=WormBase Gene ID /WP=CE02437 /TR=SW:Q11074 /GB=AAG38883.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 79      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 89      4grp_total > 10      6grp_highest_sub > Da      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1260
1 2 3 4 range
A 221.8
(-3)
P 		280.1
(-2.7)
P 		306
(-2.5)
P 		1307.7
(3)
P 		1086
B 236.5
(-3)
P 		343.4
(-2.5)
P 		280.4
(-2.8)
P 		1478.5
(3)
P 		1242
C 228.9
(-3)
P 		357.9
(-2.4)
P 		324.2
(-2.5)
P 		1481.3
(3)
P 		1252
avr 229.1
(-3) 		327.1
(-2.5) 		303.5
(-2.6) 		1422.5
(3) 		1193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 791
1 2 3 4 5 6 range
A 353.3
(-2.7)
P 		472.8
(-1.5)
P 		461.6
(-1.6)
P 		324.5
(-3)
P 		818.7
(2.1)
P 		908.6
(3)
P 		584
B 442.2
(-1.9)
P 		561.3
(-1)
P 		404.1
(-2.2)
P 		301.5
(-3)
P 		876.3
(1.4)
P 		1092
(3)
P 		791
C 402
(-2.4)
P 		569.6
(-0.8)
P 		332.2
(-3)
P 		338.4
(-2.9)
P 		680
(0.2)
P 		978.9
(3)
P 		647
avr 399.2
(-2.3) 		534.6
(-1.1) 		399.3
(-2.3) 		321.5
(-3) 		791.7
(1.2) 		993.2
(3) 		672
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 80.8
(-2.1)
P 		60.8
(-3)
P 		80
(-2.1)
P 		191.4
(3)
P 		131
B 75.4
(-2.8)
P 		84.8
(-2.5)
P 		65
(-3)
P 		315.1
(3)
P 		250
C 75.8
(-3)
P 		102.9
(-2.1)
P 		113
(-1.7)
P 		249.8
(3)
P 		174
avr 77.3
(-3) 		82.8
(-2.8) 		86
(-2.7) 		252.1
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 65.1
(-3)
P 		168.1
(0.4)
P 		100.5
(-1.8)
P 		82.3
(-2.4)
P 		247
(3)
P 		221.2
(2.1)
P 		182
B 153.9
(-1.6)
P 		186.8
(-1)
P 		98.1
(-2.7)
P 		79.8
(-3)
P 		356
(2.1)
P 		407.2
(3)
P 		327
C 149
(-1.1)
P 		173.8
(-0.6)
P 		84.6
(-2.6)
P 		68
(-3)
P 		220.1
(0.5)
P 		327.7
(3)
P 		260
avr 122.7
(-1.9) 		176.2
(-0.5) 		94.4
(-2.6) 		76.7
(-3) 		274.4
(1.9) 		318.7
(3) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16164
Sequence Type Exemplar sequence
Representative Public ID B0416.7 NCBI
Target Description B0416.7 /REP_DB=WormBase Gene ID /WP=CE02437 /TR=SW:Q11074 /GB=AAG38883.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077166(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077166 NCBI Caenorhabditis elegans B0416.7 (B0416.7) mRNA, complete cds. 11/11 None
GENEFINDER00000036829 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9296940:9297854:-1 11/11 None
B0416.7 ENSEMBL cdna:known chromosome:CEL140:X:9296940:9297851:-1 gene:B0416.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036824 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9296939-9297851(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0416.7
Entrez Gene 181986 Entrez gene
SwissProt Q11074 EMBL-EBI
WormBase CE02437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38883 Hypothetical protein B0416.7 [Caenorhabditis elegans] ref|NP_509567.1| B0416.7 [Caenorhabditis elegans] sp|Q11074|YT47_CAEEL Hypothetical protein B0416.7 in chromosome X 7.0E-74
blast CAE69841 Hypothetical protein CBG16166 [Caenorhabditis briggsae] 5.0E-49
Sequence
Target Sequence 
>C. ELEGANS:187483_AT
gaatctttcaacagctattatctcttgtttatgcattggagttcttagctatgaaaataa
gtttcaatttactggaactgtgtattgcaaaagtaacgccccatggtgtgtaagaattcg
tgttatagaagttgatacattagtcgacgacggagttgcctcagttgatttttgttcaaa
tgaagttactcaaacttacgatattggaggagtgcaagaaaatgatggacttctggaccg
taattttgaactccaaatggttgtattccataactgcagtcgcaacactgaaactgtctt
caaaacgggaatctggagaattccgcttccgaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTTTCAACAGCTATTATCTCT 194 329 15 Antisense
CAGCTATTATCTCTTGTTTATGCAT 687 203 26 Antisense
GTTTATGCATTGGAGTTCTTAGCTA 615 449 41 Antisense
GTATTGCAAAAGTAACGCCCCATGG 26 453 96 Antisense
ACGCCCCATGGTGTGTAAGAATTCG 216 89 110 Antisense
TTAGTCGACGACGGAGTTGCCTCAG 397 679 154 Antisense
GAGTTGCCTCAGTTGATTTTTGTTC 20 399 167 Antisense
GATGGACTTCTGGACCGTAATTTTG 349 405 238 Antisense
GGTTGTATTCCATAACTGCAGTCGC 22 507 273 Antisense
GTCGCAACACTGAAACTGTCTTCAA 139 475 293 Antisense
ATCTGGAGAATTCCGCTTCCGAAGG 395 33 325 Antisense
Sequence Source Affymetrix Proprietary Database