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[187481_at]

Description C27D6.1 /REP_DB=WormBase Gene ID /WP=CE01811 /TR=SW:Q10030 /GB=AAC46721.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 09      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.7
(0)
A 		2.7
(3)
A 		0.7
(-3)
A 		0.9
(-2.4)
A 		2
B 0.8
(-3)
A 		2.2
(-1.5)
A 		6.3
(3)
A 		2.5
(-1.1)
A 		6
C 0.9
(-3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		29.3
(3)
A 		28
avr 1.1
(-3) 		1.9
(-2.5) 		2.6
(-2.1) 		10.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.4
(3)
A 		1.8
(-0.6)
A 		1.7
(-0.8)
A 		0.7
(-3)
A 		1.1
(-2.1)
A 		2.2
(0.3)
A 		3
B 5.2
(3)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		0.4
(-2.8)
A 		0.7
(-2.4)
A 		0.4
(-2.8)
A 		5
C 1.7
(-2.6)
A 		13.4
(3)
A 		1.3
(-2.8)
A 		1.3
(-2.8)
A 		0.8
(-3)
A 		0.9
(-3)
A 		13
avr 3.4
(0.6) 		5.1
(3) 		1.2
(-2.4) 		0.8
(-3) 		0.9
(-2.9) 		1.2
(-2.4) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.6
(3)
A 		0.6
(3)
A 		0.2
(-1.8)
A 		0.1
(-3)
A 		1
B 0.3
(-3)
A 		0.5
(-2)
A 		1.5
(3)
A 		0.5
(-2)
A 		1
C 0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		4.9
(3)
A 		5
avr 0.4
(-3) 		0.5
(-2.6) 		0.7
(-1.7) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(1.8)
A 		0.7
(3)
A 		0.4
(-0.6)
A 		0.2
(-3)
A 		0.3
(-1.8)
A 		0.5
(0.6)
A 		1
B 1.8
(3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.3
(-2.3)
A 		0.2
(-2.6)
A 		2
C 0.6
(-2.5)
A 		4.1
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		4
avr 1
(0.4) 		1.6
(3) 		0.3
(-2.6) 		0.2
(-3) 		0.3
(-2.6) 		0.3
(-2.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5557
Sequence Type Exemplar sequence
Representative Public ID C27D6.1 NCBI
Target Description C27D6.1 /REP_DB=WormBase Gene ID /WP=CE01811 /TR=SW:Q10030 /GB=AAC46721.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062565 NCBI Caenorhabditis elegans C27D6.1 (C27D6.1) mRNA, complete cds. 11/11 None
SNAP00000035741 ENSEMBL cdna:SNAP chromosome:CEL140:II:5174778:5177262:1 11/11 None
GENEFINDER00000035747 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5174736:5177262:1 11/11 None
C27D6.1 ENSEMBL cdna:known chromosome:CEL140:II:5171891:5177262:1 gene:C27D6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5171888-5177260(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27D6.1
Entrez Gene 182964 Entrez gene
SwissProt Q10030 EMBL-EBI
WormBase CE01811 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494966 C27D6.1 [Caenorhabditis elegans] gb|AAC46721.1| Hypothetical protein C27D6.1 [Caenorhabditis elegans] sp|Q10030|YQ91_CAEEL Hypothetical protein C27D6.1 in chromosome II 0.0
blast CAE59059 Hypothetical protein CBG02343 [Caenorhabditis briggsae] 0.0
blast AAO52540 similar to Entamoeba histolytica. Myosin heavy chain [Dictyostelium discoideum] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:187481_AT
ggaggcgtattcgatgcaatttttgatcgaattgaagaacttattgctcaagagtctgtc
tatcgagttgtagtcaatgagaatagattgatttctgaaaacattttccgtggacttcaa
agtgtgagaaaagattttcaatcagggaaaagcggtggcggttccgacaaaaaacagcca
gcttcgccagtggcagctgcagcaaagattattcaagagcgacatactctgaaaacaatt
gataaaatggataaattgaataaggatcttttggcaacaatgaccattgagacactgaaa
gcagcggatattgagaagaccaatctaaagaagcgaatgaacgaacaagacgctcgaatt
cgtcaactggaacgagaaaagaaagaaggagaacgaatccgatcgataattgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCGTATTCGATGCAATTTTTG 381 515 1825 Antisense
GAACTTATTGCTCAAGAGTCTGTCT 667 349 1861 Antisense
GAGTCTGTCTATCGAGTTGTAGTCA 454 399 1876 Antisense
AACATTTTCCGTGGACTTCAAAGTG 377 137 1924 Antisense
GGCGGTTCCGACAAAAAACAGCCAG 230 541 1981 Antisense
CAAAAAACAGCCAGCTTCGCCAGTG 447 191 1992 Antisense
GCAGCTGCAGCAAAGATTATTCAAG 495 313 2017 Antisense
GGATCTTTTGGCAACAATGACCATT 257 511 2088 Antisense
GACCATTGAGACACTGAAAGCAGCG 280 383 2106 Antisense
GAACAAGACGCTCGAATTCGTCAAC 509 351 2167 Antisense
GAACGAATCCGATCGATAATTGCGA 529 347 2215 Antisense
Sequence Source Affymetrix Proprietary Database