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[187480_at]

Description B0286.1 /REP_DB=WormBase Gene ID /WP=CE03861 /TR=SW:Q10921 /GB=AAA80693.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 79.8
(3)
A 		47
(-3)
A 		77.3
(2.5)
A 		57.7
(-1)
P 		33
B 59.4
(1.3)
A 		48.9
(0.3)
A 		15.4
(-3)
A 		76.8
(3)
A 		61
C 51.6
(-0.4)
A 		57
(0.2)
A 		29.9
(-3)
A 		80.1
(3)
A 		50
avr 63.6
(1.5) 		51
(-1) 		40.9
(-3) 		71.5
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 100
(3)
P 		53.6
(-0.9)
A 		58.8
(-0.5)
A 		28.5
(-3)
A 		37.4
(-2.3)
A 		55.2
(-0.8)
A 		72
B 49.9
(-1.4)
P 		52.5
(-1)
A 		63.1
(0.6)
A 		79.3
(3)
A 		47.1
(-1.8)
A 		39.1
(-3)
A 		40
C 62.2
(-0.4)
A 		63
(-0.3)
P 		98
(3)
M 		67.3
(0.1)
A 		40
(-2.5)
A 		34.8
(-3)
P 		63
avr 70.7
(2.5) 		56.4
(-0.2) 		73.3
(3) 		58.4
(0.2) 		41.5
(-3) 		43
(-2.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 29.1
(3)
A 		10.2
(-2.5)
A 		20.2
(0.4)
A 		8.4
(-3)
P 		21
B 18.9
(3)
A 		12.1
(0.3)
A 		3.6
(-3)
A 		16.4
(2)
A 		15
C 17.1
(3)
A 		16.4
(2.4)
A 		10.4
(-3)
A 		13.5
(-0.2)
A 		7
avr 21.7
(3) 		12.9
(-2.1) 		11.4
(-3) 		12.8
(-2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18.4
(2.6)
P 		19.1
(3)
A 		12.8
(-0.2)
A 		7.2
(-3)
A 		11.3
(-0.9)
A 		13.5
(0.2)
A 		12
B 17.4
(-0.4)
P 		17.5
(-0.3)
A 		15.3
(-2.3)
A 		21
(3)
A 		19.1
(1.2)
A 		14.6
(-3)
A 		6
C 23.1
(2.2)
A 		19.2
(0.4)
P 		24.9
(3)
M 		13.5
(-2.1)
A 		12.9
(-2.4)
A 		11.6
(-3)
P 		13
avr 19.6
(3) 		18.6
(2.1) 		17.7
(1.2) 		13.9
(-2.3) 		14.4
(-1.9) 		13.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4196
Sequence Type Exemplar sequence
Representative Public ID B0286.1 NCBI
Target Description B0286.1 /REP_DB=WormBase Gene ID /WP=CE03861 /TR=SW:Q10921 /GB=AAA80693.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062375
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062375 NCBI Caenorhabditis elegans B0286.1 (B0286.1) mRNA, complete cds. None
GENEFINDER00000035733 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4383615:4384973:1 None
B0286.1 ENSEMBL cdna:known chromosome:CEL140:II:4378829:4386280:1 gene:B0286.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4383328-4385022(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0286.1
Entrez Gene 173774 Entrez gene
SwissProt Q10921 EMBL-EBI
WormBase CE30066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80693 Hypothetical protein B0286.1 [Caenorhabditis elegans] ref|NP_494776.2| B0286.1 [Caenorhabditis elegans] sp|Q10921|YWQ1_CAEEL Hypothetical protein B0286.1 in chromosome II 1.0E-105
blast CAE60132 Hypothetical protein CBG03677 [Caenorhabditis briggsae] 4.0E-42
blast AAA80693 Hypothetical protein B0286.1 [Caenorhabditis elegans] ref|NP_494776.2| B0286.1 [Caenorhabditis elegans] sp|Q10921|YWQ1_CAEEL Hypothetical protein B0286.1 in chromosome II 4.0E-37
blast T15312 hypothetical protein B0286.1 - Caenorhabditis elegans 4.0E-37
blast T15312 hypothetical protein B0286.1 - Caenorhabditis elegans 1.0E-36
blast CAE60132 Hypothetical protein CBG03677 [Caenorhabditis briggsae] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:187480_AT
gctaagagtgagggcggggtctcggaactgtgaagacggaggtgtgggtggagggaaaga
aatggaagaagattgtgcacactgtctccttctcccccctggaggagccatcgagcatta
ctcgcaaaatgagacggcacatttcagcaggaatcagaaggctgatgaaccattgttctt
cgatcgaggtaacattcaacatcacatcccgcaaaagttgttattgggacgagaattggt
gcagacactggaagaggcaaaagtgaaaaagttggaggagagagaacaaatggacaagca
tccacaggatcgcgataataaaggtgacattttgactggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAAGAGTGAGGGCGGGGTCTCGG 439 299 21 Antisense
GGCGGGGTCTCGGAACTGTGAAGAC 256 539 33 Antisense
GGAACTGTGAAGACGGAGGTGTGGG 471 527 44 Antisense
GACGGAGGTGTGGGTGGAGGGAAAG 426 365 55 Antisense
GAAGATTGTGCACACTGTCTCCTTC 588 337 88 Antisense
CCCTGGAGGAGCCATCGAGCATTAC 267 259 117 Antisense
GGAGCCATCGAGCATTACTCGCAAA 390 521 124 Antisense
CGAGCATTACTCGCAAAATGAGACG 367 249 132 Antisense
GAGACGGCACATTTCAGCAGGAATC 315 393 151 Antisense
GGCTGATGAACCATTGTTCTTCGAT 707 539 180 Antisense
ATAAAGGTGACATTTTGACTGGAAA 649 23 338 Antisense
Sequence Source Affymetrix Proprietary Database