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[187479_s_at]

Description Y62E10A.13B /REP_DB=WormBase Gene ID /WP=CE24538 /TR=Q9U1W7 /GB=CAB60607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 46      6grp_total > 94      4grp_total > 33      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4888
1 2 3 4 range
A 659.2
(-3)
P 		3167.1
(1.3)
P 		3827.1
(2.4)
P 		4188.6
(3)
P 		3529
B 707.9
(-3)
P 		3119.8
(1.2)
P 		3542.4
(1.9)
P 		4152.6
(3)
P 		3445
C 606.1
(-3)
P 		3315
(0.3)
P 		3311.9
(0.3)
P 		5494.1
(3)
P 		4888
avr 657.7
(-3) 		3200.6
(0.9) 		3560.5
(1.4) 		4611.8
(3) 		3954

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1748
1 2 3 4 5 6 range
A 2453.8
(-2.7)
P 		2653.4
(-1.8)
P 		2378.7
(-3)
P 		3147.7
(0.4)
P 		3732.6
(3)
P 		2838.7
(-1)
P 		1354
B 2590.5
(-1.7)
P 		2600
(-1.7)
P 		2241.9
(-3)
P 		3335.8
(1)
P 		3892.6
(3)
P 		2780.2
(-1)
P 		1651
C 3259.5
(1.5)
P 		2620.3
(-1.1)
P 		2145
(-3)
P 		3128.7
(1)
P 		3629.2
(3)
P 		2970.2
(0.3)
P 		1484
avr 2767.9
(-0.9) 		2624.6
(-1.5) 		2255.2
(-3) 		3204.1
(0.8) 		3751.5
(3) 		2863
(-0.6) 		1496
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 954
1 2 3 4 range
A 240
(-3)
P 		687.5
(0.5)
P 		1000.5
(3)
P 		613.1
(-0.1)
P 		761
B 225.7
(-3)
P 		770.5
(2)
P 		820.9
(2.4)
P 		884.9
(3)
P 		659
C 200.6
(-3)
P 		953.1
(1.7)
P 		1154.3
(3)
P 		926.4
(1.6)
P 		954
avr 222.1
(-3) 		803.7
(1.5) 		991.9
(3) 		808.1
(1.6) 		770

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1129
1 2 3 4 5 6 range
A 452.3
(-3)
P 		943.7
(1.4)
P 		518
(-2.4)
P 		798.3
(0.1)
P 		1126.3
(3)
P 		691.1
(-0.9)
P 		674
B 901.4
(-0.9)
P 		865.4
(-1.1)
P 		544.4
(-3)
P 		883.6
(-1)
P 		1581.5
(3)
P 		1036.7
(-0.2)
P 		1037
C 1208.2
(3)
P 		799.5
(-0.7)
P 		545.9
(-3)
P 		629.2
(-2.2)
P 		1174.4
(2.7)
P 		994.3
(1.1)
P 		662
avr 854
(-0.5) 		869.5
(-0.4) 		536.1
(-3) 		770.4
(-1.1) 		1294.1
(3) 		907.4
(-0.1) 		758
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187479_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9595
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.13B NCBI
Target Description Y62E10A.13B /REP_DB=WormBase Gene ID /WP=CE24538 /TR=Q9U1W7 /GB=CAB60607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070179(11), NM_070180(11), NM_070181(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070179 NCBI Caenorhabditis elegans Y62E10A.13a (Y62E10A.13) mRNA, complete cds. 11/11 None
NM_070180 NCBI Caenorhabditis elegans Y62E10A.13b (Y62E10A.13) mRNA, complete cds. 11/11 None
NM_070181 NCBI Caenorhabditis elegans Y62E10A.13c (Y62E10A.13) mRNA, complete cds. 11/11 None
SNAP00000008082 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13389332:13392569:-1 11/11 None
GENEFINDER00000008103 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13389332:13392569:-1 11/11 None
Y62E10A.13a ENSEMBL cdna:known chromosome:CEL140:IV:13389126:13398768:-1 gene:Y62E10A.13 11/11 A 
Y62E10A.13c.2 ENSEMBL cdna:known chromosome:CEL140:IV:13389332:13392571:-1 gene:Y62E10A.13 11/11 None
Y62E10A.13c.1 ENSEMBL cdna:known chromosome:CEL140:IV:13389332:13396676:-1 gene:Y62E10A.13 11/11 None
Y62E10A.13b ENSEMBL cdna:known chromosome:CEL140:IV:13389332:13396697:-1 gene:Y62E10A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13389337-13396703(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y62E10A.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60607 Hypothetical protein Y62E10A.13b [Caenorhabditis elegans] ref|NP_502581.1| Y62E10A.13b [Caenorhabditis elegans] 1.0E-155
blast CAB60608 Hypothetical protein Y62E10A.13a [Caenorhabditis elegans] ref|NP_502580.1| Y62E10A.13a [Caenorhabditis elegans] 1.0E-154
blast CAC42380 Hypothetical protein Y62E10A.13c [Caenorhabditis elegans] ref|NP_502582.1| Y62E10A.13c [Caenorhabditis elegans] 1.0E-147
blast CAB60607 Hypothetical protein Y62E10A.13b [Caenorhabditis elegans] ref|NP_502581.1| Y62E10A.13b [Caenorhabditis elegans] 1.0E-146
blast CAB60608 Hypothetical protein Y62E10A.13a [Caenorhabditis elegans] ref|NP_502580.1| Y62E10A.13a [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.2E-11
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.3E-11
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.2E-11
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.1E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502581.1 1 7-29
Y62E10A.13b 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187479_S_AT
gaagccgtcgccaatgtgacacggacggcgatgaacggcaacgcccgcttcagagatgct
cttgccgcccgtcttcaggtaatgaaaccaaatcacgagcaacttgaacaatttgtgaat
atttccaaaccaaagctcactgttggaattcgagaacttgtgagccgtcttcatgctcgt
ggaactcacgtatatcttgtctctggtggatttagacgacttattcttccagttgctgaa
cttcttggaattgagaaatctcgaatttatgcaaacgagattcttttcgataaattcgga
aaatatcacggatttgatacttctgaattgacgagtgactcgggaagcaaagagctaaaa
tcttcaattaccaacctttttggtccaactggcaaaccggctgtgatagctcttctgaaa
aagatgtacaactacaaaacagttgtgatggttggtgacggagcaaccgatgttgaagct
tcacccccagctgatgcattcattggattcggtggaaatgtcattagagaaggtgtaaag
gctcgtgccaaatggtacgtcaccgatttcgatgttcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGTCGCCAATGTGACACGGA 665 343 262 Antisense
GACGGCGATGAACGGCAACGCCCGC 664 375 285 Antisense
ATATTTCCAAACCAAAGCTCACTGT 137 17 380 Antisense
GGAATTCGAGAACTTGTGAGCCGTC 687 533 406 Antisense
CGTCTTCATGCTCGTGGAACTCACG 36 247 427 Antisense
GGAACTCACGTATATCTTGTCTCTG 638 529 442 Antisense
TAGACGACTTATTCTTCCAGTTGCT 303 653 474 Antisense
AAACCGGCTGTGATAGCTCTTCTGA 128 125 655 Antisense
GCAACCGATGTTGAAGCTTCACCCC 105 321 724 Antisense
GGCTCGTGCCAAATGGTACGTCACC 206 539 801 Antisense
ACGTCACCGATTTCGATGTTCTTCG 294 95 818 Antisense
Sequence Source Affymetrix Proprietary Database