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[187478_at]

Description Y54E10BL.3 /REP_DB=WormBase Gene ID /WP=CE25435 /TR=Q9N3D8 /GB=AAF60778.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 74.9
(1.6)
A 		73
(1.3)
A 		41.4
(-3)
A 		85.3
(3)
A 		44
B 42.5
(0)
A 		43.6
(0.1)
A 		75.4
(3)
A 		8.9
(-3)
A 		67
C 93.5
(3)
A 		69.4
(-0.7)
A 		85.4
(1.7)
A 		54.9
(-3)
A 		39
avr 70.3
(3) 		62
(0.6) 		67.4
(2.2) 		49.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 95
(2.1)
A 		102.4
(3)
A 		80.5
(0.3)
A 		74.6
(-0.4)
A 		97.4
(2.4)
P 		53.1
(-3)
A 		49
B 84.1
(1.7)
A 		61.7
(-0.9)
A 		42.7
(-3)
A 		95.8
(3)
A 		52.3
(-1.9)
A 		62.4
(-0.8)
A 		53
C 72.4
(1.3)
A 		63.5
(0.6)
A 		91.7
(2.9)
A 		92.8
(3)
P 		63.2
(0.6)
A 		19.5
(-3)
A 		73
avr 83.8
(2.5) 		75.9
(1.3) 		71.6
(0.7) 		87.7
(3) 		71
(0.7) 		45
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 27.3
(3)
A 		15.8
(-1.2)
A 		10.8
(-3)
A 		12.5
(-2.4)
A 		17
B 13.5
(1.5)
A 		10.8
(0.4)
A 		17.5
(3)
A 		1.9
(-3)
A 		16
C 30.9
(3)
A 		20
(-0)
A 		29.8
(2.7)
A 		9.2
(-3)
A 		22
avr 23.9
(3) 		15.5
(-0.2) 		19.4
(1.3) 		7.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.5
(-1.8)
A 		36.4
(3)
A 		17.5
(-1.8)
A 		18.9
(-1.5)
A 		29.4
(1.2)
P 		12.9
(-3)
A 		24
B 29.3
(3)
A 		20.5
(0.2)
A 		10.4
(-3)
A 		25.4
(1.8)
A 		21.2
(0.4)
A 		23.3
(1.1)
A 		19
C 26.9
(3)
A 		19.4
(0.8)
A 		23.3
(1.9)
A 		18.7
(0.6)
P 		20.5
(1.1)
A 		6.5
(-3)
A 		20
avr 24.6
(2.6) 		25.4
(3) 		17.1
(-1.4) 		21
(0.6) 		23.7
(2.1) 		14.2
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.106
Sequence Type Exemplar sequence
Representative Public ID Y54E10BL.3 NCBI
Target Description Y54E10BL.3 /REP_DB=WormBase Gene ID /WP=CE25435 /TR=Q9N3D8 /GB=AAF60778.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058685 NCBI Caenorhabditis elegans Y54E10BL.3 (Y54E10BL.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040899 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3003917:3005622:1 9/11 None
Y54E10BL.3 ENSEMBL cdna:known chromosome:CEL140:I:3003546:3005622:1 gene:Y54E10BL.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3003545-3005622(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10BL.3
Entrez Gene 190263 Entrez gene
SwissProt Q9N3D8 EMBL-EBI
WormBase CE25435 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60778 Hypothetical protein Y54E10BL.3 [Caenorhabditis elegans] ref|NP_491086.1| Y54E10BL.3 [Caenorhabditis elegans] 1.0E-115
blast AAF60778 Hypothetical protein Y54E10BL.3 [Caenorhabditis elegans] ref|NP_491086.1| Y54E10BL.3 [Caenorhabditis elegans] 4.0E-18
blast CAE60560 Hypothetical protein CBG04189 [Caenorhabditis briggsae] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491086.1 1 135-157
Y54E10BL.3 1 135-157
GENEFINDER00000040899 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:187478_AT
tttcctattttcggtggatcccagcaaaatttcagcaaaattccatccatctactaattt
ttccgcaaaaaatcgccaaattttccaaatctttgtattcaaaaattgttgaaagtggat
tccaagttcaaaaaaatttcgtcaatttattttttttattcatactaacttttcttcagg
aaaatcggctaattttccgaatctttgctactaaaaaattgttgaaaatccacaaaagtc
ttttcctctttctcccacacacaaaaatcgatatcaagcgcagtagtgtgtgctctttct
ctctcggagcaagaaggcaacttggggctctgtcaaacatggacgccgtctataatctcg
ttgaatctgttcacgtttttattcctgtcgtcgcgcttctcgtctttctcacagttattt
atattaattcgaaaactcctgatgagccggaagcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTATTTTCGGTGGATCCCAGC 609 669 59 Antisense
CCATCCATCTACTAATTTTTCCGCA 690 271 101 Antisense
GGCTAATTTTCCGAATCTTTGCTAC 385 539 245 Antisense
AAGCGCAGTAGTGTGTGCTCTTTCT 33 151 334 Antisense
GCTCTTTCTCTCTCGGAGCAAGAAG 103 301 350 Antisense
AGAAGGCAACTTGGGGCTCTGTCAA 175 75 370 Antisense
GGCTCTGTCAAACATGGACGCCGTC 432 539 384 Antisense
GGACGCCGTCTATAATCTCGTTGAA 240 523 399 Antisense
ATCTGTTCACGTTTTTATTCCTGTC 51 35 423 Antisense
TTCTCGTCTTTCTCACAGTTATTTA 374 691 455 Antisense
AAACTCCTGATGAGCCGGAAGCGGG 674 119 491 Antisense
Sequence Source Affymetrix Proprietary Database