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[187477_s_at]

Description F19F10.11A /REP_DB=WormBase Gene ID /WP=CE09491 /TR=O01526 /GB=AAB52289.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 31      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 44.7
(2.1)
A 		3
(-3)
A 		10.6
(-2.1)
A 		52.2
(3)
A 		49
B 88.5
(3)
P 		9.8
(-3)
A 		13.1
(-2.7)
A 		17.2
(-2.4)
A 		79
C 9.9
(-0.2)
A 		1.8
(-3)
A 		19.1
(3)
A 		9.9
(-0.2)
A 		17
avr 47.7
(3) 		4.9
(-3) 		14.3
(-1.7) 		26.4
(0) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 74.1
(0)
P 		32.5
(-3)
A 		49.7
(-1.7)
A 		39.9
(-2.5)
A 		59.6
(-1)
A 		114.5
(3)
P 		82
B 79.4
(0.6)
A 		39.6
(-1.7)
A 		17.9
(-3)
A 		64.7
(-0.3)
A 		64.9
(-0.3)
A 		121.2
(3)
P 		103
C 47.7
(-3)
A 		58
(-2.2)
A 		48.6
(-2.9)
A 		97.3
(1)
A 		104.5
(1.5)
A 		122.8
(3)
M 		75
avr 67.1
(-0.9) 		43.4
(-2.7) 		38.7
(-3) 		67.3
(-0.9) 		76.3
(-0.2) 		119.5
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 16.3
(3)
A 		0.6
(-3)
A 		2.8
(-2.2)
A 		7.6
(-0.3)
A 		16
B 28.2
(3)
P 		2.4
(-3)
A 		3
(-2.9)
A 		3.7
(-2.7)
A 		26
C 3.3
(-0.3)
A 		0.5
(-3)
A 		6.7
(3)
A 		1.7
(-1.8)
A 		6
avr 15.9
(3) 		1.2
(-3) 		4.2
(-1.8) 		4.3
(-1.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.7
(-1.8)
P 		11.6
(-2.5)
A 		10.8
(-2.8)
A 		10.1
(-3)
A 		18
(-0.3)
A 		27.9
(3)
P 		18
B 27.6
(0.4)
A 		13.2
(-1.7)
A 		4.4
(-3)
A 		17.1
(-1.1)
A 		26.4
(0.2)
A 		45.2
(3)
P 		41
C 17.7
(-1.9)
A 		17.7
(-1.9)
A 		12.4
(-3)
A 		19.6
(-1.5)
A 		33.8
(1.5)
A 		41.1
(3)
M 		29
avr 19.7
(-0.8) 		14.2
(-2) 		9.2
(-3) 		15.6
(-1.7) 		26.1
(0.5) 		38.1
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187477_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11264
Sequence Type Exemplar sequence
Representative Public ID F19F10.11A NCBI
Target Description F19F10.11A /REP_DB=WormBase Gene ID /WP=CE09491 /TR=O01526 /GB=AAB52289.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072554 NCBI Caenorhabditis elegans F19F10.11a (F19F10.11) mRNA, complete cds. 11/11 A 
F19F10.11a ENSEMBL cdna:known chromosome:CEL140:V:7584065:7590190:-1 gene:F19F10.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179143 2 1 NM_072554 187477_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7584205-7590191(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19F10.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52289 Hypothetical protein F19F10.11a [Caenorhabditis elegans] ref|NP_504955.1| F19F10.11a [Caenorhabditis elegans] pir||T25715 hypothetical protein F19F10.11a - Caenorhabditis elegans 0.0
blast AAB52290 Hypothetical protein F19F10.11b [Caenorhabditis elegans] ref|NP_504956.1| F19F10.11b [Caenorhabditis elegans] pir||T25716 hypothetical protein F19F10.11b - Caenorhabditis elegans 0.0
blast AAB52288 Hypothetical protein F19F10.10 [Caenorhabditis elegans] ref|NP_504954.1| F19F10.10 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:187477_S_AT
gctattccattggagctcactccgccgatttttaatcgtaaagcgatttttttctgtctg
gaacacatgcatgagacttgtgatgagctgttcaagatgtttggtgtgaacagtccggag
gaaatatttcgagttgatccgagcagtgtggatgaggaattgttaagaatggcggcttat
atctcgggacgagagagcatatcagcgcaacttttgaaatgtatttcgtacaaattcact
gtcaaatacctccagaagacgtgcgcaatgtgcgacttgaatttttatcggaaggatatg
atgagcatctcgagagaagcgtgggcgctggcccaatggattgactgtagaaagcttgag
ttgaccgattcgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTCCATTGGAGCTCACTCCGC 678 303 2761 Antisense
CTCACTCCGCCGATTTTTAATCGTA 143 227 2776 Antisense
GTAAAGCGATTTTTTTCTGTCTGGA 549 461 2798 Antisense
GTTTGGTGTGAACAGTCCGGAGGAA 66 235 2859 Antisense
GAATGGCGGCTTATATCTCGGGACG 174 333 2927 Antisense
AGAGAGCATATCAGCGCAACTTTTG 433 69 2952 Antisense
TACAAATTCACTGTCAAATACCTCC 324 643 2989 Antisense
AATACCTCCAGAAGACGTGCGCAAT 706 171 3005 Antisense
GCATCTCGAGAGAAGCGTGGGCGCT 352 309 3065 Antisense
GCGCTGGCCCAATGGATTGACTGTA 303 283 3085 Antisense
AAAGCTTGAGTTGACCGATTCGTGG 250 123 3111 Antisense
Sequence Source Affymetrix Proprietary Database