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[187476_at]

Description F37A4.1 /REP_DB=WormBase Gene ID /WP=CE00711 /TR=SW:P41879 /GB=AAA50629.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 57      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 77      6grp_total > 59      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 800
1 2 3 4 range
A 1682
(3)
P 		1197.8
(-0.9)
P 		1044
(-2.2)
P 		939.1
(-3)
P 		743
B 1738.9
(3)
P 		1087.2
(-2.8)
P 		1089.3
(-2.8)
P 		1068.3
(-3)
P 		671
C 1417.9
(3)
P 		970.5
(-3)
P 		1059.8
(-1.8)
P 		994.7
(-2.7)
P 		447
avr 1612.9
(3) 		1085.2
(-2.2) 		1064.4
(-2.4) 		1000.7
(-3) 		612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 1539.2
(0.7)
P 		1348.2
(-2.5)
P 		1316.7
(-3)
P 		1409.1
(-1.5)
P 		1530.7
(0.5)
P 		1680.9
(3)
P 		364
B 1704.3
(3)
P 		1350.6
(-3)
P 		1412
(-2)
P 		1361.3
(-2.8)
P 		1417.9
(-1.9)
P 		1658.5
(2.2)
P 		354
C 1426.4
(-1.8)
P 		1411.9
(-2.3)
P 		1387.4
(-3)
P 		1560.9
(2.2)
P 		1393.7
(-2.8)
P 		1588
(3)
P 		201
avr 1556.6
(1.1) 		1370.2
(-3) 		1372
(-3) 		1443.8
(-1.4) 		1447.4
(-1.3) 		1642.5
(3) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 612.4
(3)
P 		260
(-1.5)
P 		272.9
(-1.3)
P 		137.5
(-3)
P 		475
B 554.5
(3)
P 		268.5
(-2.3)
P 		252.4
(-2.5)
P 		227.7
(-3)
P 		327
C 469.4
(3)
P 		279
(-0.8)
P 		369.4
(1)
P 		167.7
(-3)
P 		302
avr 545.4
(3) 		269.2
(-1.5) 		298.2
(-1) 		177.6
(-3) 		368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 283.7
(-3)
P 		479.5
(3)
P 		286.8
(-2.9)
P 		357.4
(-0.7)
P 		461.9
(2.5)
P 		409.2
(0.8)
P 		196
B 593
(2.4)
P 		449.6
(-0.7)
P 		342.9
(-3)
P 		360.6
(-2.6)
P 		576.1
(2.1)
P 		618.5
(3)
P 		276
C 528.7
(2.9)
P 		430.8
(0.2)
P 		353.1
(-1.9)
P 		313.9
(-3)
P 		451
(0.8)
P 		531.6
(3)
P 		218
avr 468.5
(1.4) 		453.3
(0.9) 		327.6
(-3) 		344
(-2.5) 		496.3
(2.3) 		519.8
(3) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7548
Sequence Type Exemplar sequence
Representative Public ID F37A4.1 NCBI
Target Description F37A4.1 /REP_DB=WormBase Gene ID /WP=CE00711 /TR=SW:P41879 /GB=AAA50629.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066074 NCBI Caenorhabditis elegans F37A4.1 (F37A4.1) mRNA, complete cds. 11/11 None
SNAP00000044174 ENSEMBL cdna:SNAP chromosome:CEL140:III:6723337:6725371:1 11/11 None
GENEFINDER00000044175 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6723337:6725449:1 11/11 None
F37A4.1.1 ENSEMBL cdna:known chromosome:CEL140:III:6723320:6725644:1 gene:F37A4.1 11/11 None
F37A4.1.2 ENSEMBL cdna:known chromosome:CEL140:III:6723322:6725644:1 gene:F37A4.1 11/11 None
F37A4.1.3 ENSEMBL cdna:known chromosome:CEL140:III:6723325:6725601:1 gene:F37A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6723335-6725448(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A4.1
Entrez Gene 175948 Entrez gene
SwissProt P41879 EMBL-EBI
WormBase CE00711 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606019_AT similar to HLA-B associated transcript 5 cfa
CANINE:1603380_AT similar to HLA-B associated transcript 5 cfa
CANINE:1597211_S_AT similar to HLA-B associated transcript 5 cfa
CANINE_2:CFA.13087.1.S1_S_AT similar to HLA-B associated transcript 5 cfa
CANINE_2:CFA.13087.3.S1_S_AT similar to HLA-B associated transcript 5 cfa
CANINE_2:CFA.8370.1.A1_AT similar to HLA-B associated transcript 5 cfa
CANINE_2:CFA.8370.1.A1_S_AT similar to HLA-B associated transcript 5 cfa
CANINE_2:CFAAFFX.1832.1.S1_S_AT similar to HLA-B associated transcript 5 cfa
DROSOPHILA_2:1630881_AT dm
DROSGENOME1:152115_AT dm
HU35KSUBA:RC_AA253466_AT HLA-B associated transcript 5 hs
HU35KSUBA:AA477919_AT HLA-B associated transcript 5 hs
HU35KSUBD:RC_T33619_S_AT HLA-B associated transcript 5 hs
U133_X3P:HS.247452.0.S1_3P_S_AT HLA-B associated transcript 5 hs
HG-U133_PLUS_2:224756_S_AT HLA-B associated transcript 5 hs
HG-U133B:224756_S_AT HLA-B associated transcript 5 hs
HG-U133_PLUS_2:230221_AT HLA-B associated transcript 5 hs
HG-U133B:230221_AT HLA-B associated transcript 5 hs
HG-U95B:57204_AT HLA-B associated transcript 5 hs
MG-U74AV2:99652_AT HLA-B associated transcript 5 mm
MG-U74BV2:164658_AT HLA-B associated transcript 5 mm
MOE430A:1460709_A_AT HLA-B associated transcript 5 mm
MOUSE430A_2:1460709_A_AT HLA-B associated transcript 5 mm
MOUSE430_2:1460709_A_AT HLA-B associated transcript 5 mm
MOE430A:1415732_AT HLA-B associated transcript 5 mm
MOE430B:1415732_AT HLA-B associated transcript 5 mm
MOUSE430A_2:1415732_AT HLA-B associated transcript 5 mm
MOUSE430_2:1415732_AT HLA-B associated transcript 5 mm
MU19KSUBC:TC36934_AT HLA-B associated transcript 5, mRNA (cDNA clone MGC:19234 IMAGE:2648618) mm
RG-U34B:RC_AA849805_AT HLA-B associated transcript 5 rn
RAE230A:1371985_A_AT HLA-B associated transcript 5 rn
RAT230_2:1371985_A_AT HLA-B associated transcript 5 rn
Protein Similarities
Method ID Description E-Value
blast AAA50629 Hypothetical protein F37A4.1 [Caenorhabditis elegans] ref|NP_498475.1| F37A4.1 [Caenorhabditis elegans] sp|P41879|YPT1_CAEEL Hypothetical protein F37A4.1 in chromosome III 0.0
blast CAE70114 Hypothetical protein CBG16566 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 1.8E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498475.1 2 34-56,63-85
F37A4.1.1 2 34-56,63-85
F37A4.1.2 2 34-56,63-85
F37A4.1.3 2 34-56,63-85
SNAP00000044174 2 34-56,63-85
GENEFINDER00000044175 2 34-56,63-85
Sequence
Target Sequence 
>C. ELEGANS:187476_AT
gcagtacgctattcaagttcttggatatcgccaggagaatattgttctttttgggtggtc
gattggcgggttcccagttgcttggctcgcgtccaactatccaaatgtaaaagcagttgt
attggatgccacattcgacgacttactgccacttgcgctgttcagaatgccgacgttctt
ctctaccattgtggagcatgcgatcagaaaccatatgaatcttcaaatcgataaattgct
cgctcgttacaagggaccaatccgtctgattcgacgcctccaagaagagattctgaccac
tgcagttgatgatcaacccgagaatgttcgacgagcaacaaatcgaatcaattggctact
caaatcgatcatcaaagacagacatcccgagttgattcaaaatttggaaccacaagtaga
tcgttggctcgacatgactccaaccgaacggctcatgcattcgggagtcagcttgcgcga
agaatcaacacaaagaaaacgtctttttgatgcatgtaatcactatttgattgatttcga
cgcaaatcacgttactcctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTACGCTATTCAAGTTCTTGGA 448 311 855 Antisense
CTCGCGTCCAACTATCCAAATGTAA 480 233 940 Antisense
GATGCCACATTCGACGACTTACTGC 574 415 979 Antisense
CTGCCACTTGCGCTGTTCAGAATGC 171 237 1000 Antisense
TTCAGAATGCCGACGTTCTTCTCTA 129 687 1015 Antisense
ATCGATAAATTGCTCGCTCGTTACA 226 37 1081 Antisense
GGACCAATCCGTCTGATTCGACGCC 347 515 1108 Antisense
TAGATCGTTGGCTCGACATGACTCC 18 653 1271 Antisense
TGACTCCAACCGAACGGCTCATGCA 682 569 1289 Antisense
GCATTCGGGAGTCAGCTTGCGCGAA 141 305 1311 Antisense
TCGACGCAAATCACGTTACTCCTCT 563 601 1391 Antisense
Sequence Source Affymetrix Proprietary Database