[Home] | [Total List]

[187475_at]

Description ZK1073.1 /REP_DB=WormBase Gene ID /WP=CE03845 /TR=SW:O02485 /GB=CAA92227.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 51      6grp_total > 19      4grp_total > 54      6grp_highest_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1097
1 2 3 4 range
A 1107.3
(3)
P 		576.8
(-0.8)
P 		419.3
(-1.9)
P 		259.3
(-3)
P 		848
B 1227.7
(3)
P 		582.7
(-1.2)
P 		468.9
(-1.9)
P 		303.4
(-3)
P 		924
C 1313.1
(3)
P 		731.5
(-0.2)
P 		431.8
(-1.8)
P 		216.6
(-3)
P 		1097
avr 1216
(3) 		630.3
(-0.7) 		440
(-1.9) 		259.8
(-3) 		956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 543.6
(-0.5)
P 		767.8
(3)
P 		382.4
(-3)
P 		649.8
(1.2)
P 		440.7
(-2.1)
P 		754.7
(2.8)
P 		385
B 464.2
(1.1)
P 		407.8
(-0.9)
P 		405.8
(-1)
P 		461.6
(1)
P 		520.5
(3)
P 		346.9
(-3)
P 		174
C 1187.3
(3)
P 		329.7
(-3)
P 		714.7
(-0.3)
P 		360.8
(-2.8)
P 		777
(0.1)
P 		421.5
(-2.4)
P 		858
avr 731.7
(3) 		501.8
(-2.7) 		501
(-2.7) 		490.7
(-3) 		579.4
(-0.8) 		507.7
(-2.6) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 403.2
(3)
P 		125.2
(-1.6)
P 		109.6
(-1.8)
P 		38
(-3)
P 		365
B 391.5
(3)
P 		143.9
(-1.5)
P 		108.6
(-2.2)
P 		64.7
(-3)
P 		327
C 434.7
(3)
P 		210.3
(-0.4)
P 		150.5
(-1.3)
P 		36.5
(-3)
P 		398
avr 409.8
(3) 		159.8
(-1.1) 		122.9
(-1.7) 		46.4
(-3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 100.2
(-2.5)
P 		273.1
(3)
P 		83.3
(-3)
P 		164.8
(-0.4)
P 		133
(-1.4)
P 		183.8
(0.2)
P 		190
B 161.5
(0.3)
P 		135.7
(-1)
P 		98.5
(-3)
P 		122.3
(-1.7)
P 		211.5
(3)
P 		129.4
(-1.4)
P 		113
C 440.1
(3)
P 		100.6
(-2.5)
P 		181.9
(-1.2)
P 		72.6
(-3)
P 		251.4
(-0.1)
P 		141.1
(-1.9)
P 		368
avr 233.9
(3) 		169.8
(-0.4) 		121.2
(-2.9) 		119.9
(-3) 		198.6
(1.1) 		151.4
(-1.3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17509
Sequence Type Exemplar sequence
Representative Public ID ZK1073.1 NCBI
Target Description ZK1073.1 /REP_DB=WormBase Gene ID /WP=CE03845 /TR=SW:O02485 /GB=CAA92227.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078233 NCBI Caenorhabditis elegans ZK1073.1 (ZK1073.1) mRNA, complete cds. 11/11 None
SNAP00000005935 ENSEMBL cdna:SNAP chromosome:CEL140:X:16124314:16128728:-1 11/11 None
GENEFINDER00000005936 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16124314:16128728:-1 11/11 None
ZK1073.1.1 ENSEMBL cdna:known chromosome:CEL140:X:16123862:16128730:-1 gene:ZK1073.1 11/11 None
ZK1073.1.2 ENSEMBL cdna:known chromosome:CEL140:X:16123862:16128780:-1 gene:ZK1073.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16124313-16128728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1073.1
Entrez Gene 181689 Entrez gene
SwissProt O02485 EMBL-EBI
WormBase CE03845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640883_A_AT dm
DROSOPHILA_2:1633443_S_AT dm
DROSGENOME1:151855_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30154 cell differentiation inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92227 Hypothetical protein ZK1073.1 [Caenorhabditis elegans] ref|NP_510634.1| ZK1073.1 [Caenorhabditis elegans] sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X 0.0
blast CAE69993 Hypothetical protein CBG16397 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR004142 EMBL-EBI Ndr family 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187475_AT
gaatcgtcttggtgcactgcacatctacgactgctggaattattgagtactgcaaggaaa
aggtcatgaacatgcgtttggagaactccatcatgtcggacggtgcctgggactacttgc
tagcccacaaatttggaggagaatccaaatctcgccaggaatacttggaagagctcaagg
ccaccttgaacccaaagaacttgtccaagtacctcgtcgctttcaccaaacgtactgatc
tctcctcaactattggaacaaagctcgagacagtggacgcacttttggtgactggaagca
aggcttctcatctccacacggtttacacgactcacaagtcgatgaacaagaagaaaacga
ctctgttggtggtggacaacgtggccgatgttatgcaagaggctccagacaagctcgccc
gctcgctgatccttctctgcaaaggatgcggagtgctctcgggagtcgccatcccaggaa
tggagcgccaaagaactctgtccagctcgatggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGTCTTGGTGCACTGCACATC 315 329 410 Antisense
CACTGCACATCTACGACTGCTGGAA 129 199 424 Antisense
AGAACTCCATCATGTCGGACGGTGC 144 73 491 Antisense
TGCCTGGGACTACTTGCTAGCCCAC 308 583 513 Antisense
AGAACTTGTCCAAGTACCTCGTCGC 621 71 605 Antisense
GTCGCTTTCACCAAACGTACTGATC 313 473 625 Antisense
TACTGATCTCTCCTCAACTATTGGA 301 645 642 Antisense
TCCACACGGTTTACACGACTCACAA 263 589 722 Antisense
GTGGACAACGTGGCCGATGTTATGC 448 491 781 Antisense
GCAAGAGGCTCCAGACAAGCTCGCC 351 321 804 Antisense
AGAACTCTGTCCAGCTCGATGGAAG 483 73 901 Antisense
Sequence Source Affymetrix Proprietary Database