[Home] | [Total List]

[187474_s_at]

Description Y110A2AR.3 /REP_DB=WormBase Gene ID /WP=CE25196 /TR=Q9N489 /GB=AAF60412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 53      6grp_total > 45      4grp_total > 59      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 212.7
(-0.3)
P 		265.2
(1.7)
M 		298.6
(3)
P 		144
(-3)
P 		155
B 232
(0.2)
A 		247.6
(1.1)
A 		280.2
(3)
P 		175.5
(-3)
P 		105
C 265.5
(0)
P 		346.3
(3)
P 		329.6
(2.4)
P 		182.9
(-3)
A 		163
avr 236.7
(0.1) 		286.4
(2.3) 		302.8
(3) 		167.5
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 176.7
(-2.4)
A 		253.2
(3)
P 		222
(0.8)
A 		237.1
(1.9)
A 		168.6
(-3)
A 		222.2
(0.8)
A 		85
B 199.8
(-2)
A 		223.3
(3)
A 		195.9
(-2.8)
A 		204.4
(-1)
A 		195.1
(-3)
P 		216.3
(1.5)
A 		28
C 258
(3)
P 		203.5
(-1.1)
A 		258.6
(3)
A 		177.3
(-3)
A 		197.9
(-1.5)
A 		182.1
(-2.6)
A 		81
avr 211.5
(0.7) 		226.7
(3) 		225.5
(2.8) 		206.3
(-0.1) 		187.2
(-3) 		206.9
(-0) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 77.4
(2.9)
P 		57.6
(0.8)
M 		78
(3)
P 		21.1
(-3)
P 		57
B 74
(3)
A 		61.2
(0.9)
A 		64.9
(1.5)
P 		37.4
(-3)
P 		37
C 87.9
(1.1)
P 		99.6
(1.9)
P 		114.9
(3)
P 		30.8
(-3)
A 		84
avr 79.8
(2.3) 		72.8
(1.6) 		85.9
(3) 		29.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 32.6
(-3)
A 		90.1
(3)
P 		48.4
(-1.4)
A 		60.1
(-0.1)
A 		50.9
(-1.1)
A 		54.1
(-0.8)
A 		58
B 69.5
(1)
A 		74.3
(1.8)
A 		47.6
(-3)
A 		54.1
(-1.8)
A 		79.3
(2.7)
P 		80.7
(3)
A 		33
C 95.6
(3)
P 		62.1
(-0.4)
A 		65.8
(0)
A 		35.7
(-3)
A 		64
(-0.2)
A 		60.9
(-0.5)
A 		60
avr 65.9
(0.7) 		75.5
(3) 		53.9
(-2.1) 		50
(-3) 		64.7
(0.5) 		65.2
(0.6) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187474_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5912
Sequence Type Exemplar sequence
Representative Public ID Y110A2AR.3 NCBI
Target Description Y110A2AR.3 /REP_DB=WormBase Gene ID /WP=CE25196 /TR=Q9N489 /GB=AAF60412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061997 NCBI Caenorhabditis elegans Y110A2AR.3a (Y110A2AR.3) mRNA, complete cds. 11/11 None
GENEFINDER00000019163 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2908091:2919148:-1 11/11 None
Y110A2AR.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:2913717:2919311:-1 gene:Y110A2AR.3 11/11 None
Y110A2AR.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:2913919:2919704:-1 gene:Y110A2AR.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182189 2/11 Cross Hyb Matching Probes None
SNAP00000019161 8/11 Cross Hyb Matching Probes None
Y110A2AR.3b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173638 2 1 NM_061997 187474_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2914862-2919147(-) 98.59 98.59
Public Domain and Genome References
Ensembl Y110A2AR.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60412 Hypothetical protein Y110A2AR.3a [Caenorhabditis elegans] ref|NP_494398.1| Y110A2AR.3a [Caenorhabditis elegans] 1.0E-104
blast AAF60412 Hypothetical protein Y110A2AR.3a [Caenorhabditis elegans] ref|NP_494398.1| Y110A2AR.3a [Caenorhabditis elegans] 1.0E-102
blast CAE72449 Hypothetical protein CBG19619 [Caenorhabditis briggsae] 9.0E-94
blast CAE72449 Hypothetical protein CBG19619 [Caenorhabditis briggsae] 3.0E-93
blast AAF60411 Ubiquitin conjugating enzyme protein 15 [Caenorhabditis elegans] ref|NP_494397.1| UBiquitin Conjugating enzyme family member (ubc-15) [Caenorhabditis elegans] 8.0E-83
blast AAH59487 Hypothetical protein MGC73124 [Danio rerio] ref|NP_957016.1| hypothetical protein LOC393695 [Danio rerio] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.2E-26
Sequence
Target Sequence 
>C. ELEGANS:187474_S_AT
gacgggacgaatgcggcttgtcgccatcggaaaacgtctggaaatgcgtttagaagacgg
agaaacctgcgatttatacgcgaaatgcccgatcgatgcgcaccctggcaacgcaattga
ggcggtttccgatagttctcgatattttgtgattcgtttgcagaacgacaatggacagca
ggcattcgtgggatgcgggtttcaggagagaggagatgcttttgactttaatgtcacact
tcaagatcactttcgttatatcgaacgaagcgccgaactggaaaaacaggatctttctgc
cggtccaagcttggatttagcatttaaagagggacaaaccatctcaattaacattggaaa
aaaggataaaagtgcagtttcccgccctcgtccggctcctggagcatctactggaggcct
agtgccactgcttccaccgccgccaggtgccggctcaatgatcagaaactctcgtccttc
caccaccaccactacggcttcatcttctctgtcttctgcttttgctgctccaccgccggc
tccgagctcttcgacgagcacaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGGACGAATGCGGCTTGTCGCC 363 371 129 Antisense
GCTTGTCGCCATCGGAAAACGTCTG 206 305 144 Antisense
ATACGCGAAATGCCCGATCGATGCG 467 23 204 Antisense
GCACCCTGGCAACGCAATTGAGGCG 52 315 228 Antisense
GAGGCGGTTTCCGATAGTTCTCGAT 163 403 247 Antisense
ATTCGTGGGATGCGGGTTTCAGGAG 538 1 312 Antisense
GAAAAACAGGATCTTTCTGCCGGTC 394 353 409 Antisense
GGCTCCTGGAGCATCTACTGGAGGC 32 541 522 Antisense
TCTACTGGAGGCCTAGTGCCACTGC 630 613 535 Antisense
AATGATCAGAAACTCTCGTCCTTCC 252 165 585 Antisense
TCCGAGCTCTTCGACGAGCACAACG 690 593 669 Antisense
Sequence Source Affymetrix Proprietary Database