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[187473_at]

Description B0361.3 /REP_DB=WormBase Gene ID /WP=CE00752 /TR=SW:Q10947 /GB=AAK18864.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 53      6grp_total > 70      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 563.5
(-0)
P 		669.6
(2.7)
P 		682.7
(3)
P 		444.7
(-3)
P 		238
B 607
(1.5)
P 		671.1
(3)
P 		559
(0.4)
P 		411.1
(-3)
P 		260
C 568.6
(-0.6)
P 		673.5
(1.5)
P 		750.5
(3)
P 		444.4
(-3)
P 		306
avr 579.7
(0.7) 		671.4
(3) 		664.1
(2.8) 		433.4
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 731.2
(-1.6)
P 		677.5
(-2.3)
P 		953.3
(1.3)
P 		1086
(3)
P 		716.6
(-1.8)
P 		620
(-3)
P 		466
B 684
(-2.9)
P 		748.6
(-1.7)
P 		864.1
(0.4)
P 		1009
(3)
P 		730
(-2)
P 		677
(-3)
P 		332
C 600.3
(-2.7)
P 		813
(-0.8)
P 		934.3
(0.3)
P 		1228.9
(3)
P 		563.9
(-3)
P 		791.9
(-0.9)
P 		665
avr 671.8
(-3) 		746.4
(-2) 		917.2
(0.4) 		1108
(3) 		670.2
(-3) 		696.3
(-2.6) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 205.2
(3)
P 		145.4
(0.4)
P 		178.5
(1.9)
P 		65.1
(-3)
P 		140
B 193.6
(3)
P 		165.8
(1.4)
P 		129.5
(-0.6)
P 		87.6
(-3)
P 		106
C 188.2
(0.6)
P 		193.6
(0.8)
P 		261.6
(3)
P 		74.9
(-3)
P 		187
avr 195.7
(3) 		168.3
(1.6) 		189.9
(2.7) 		75.9
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 134.8
(-3)
P 		240.9
(1.5)
P 		207.6
(0.1)
P 		275.4
(3)
P 		216.2
(0.5)
P 		151
(-2.3)
P 		141
B 238
(-1.1)
P 		249.2
(-0.3)
P 		209.8
(-3)
P 		267.2
(1)
P 		296.6
(3)
P 		252.5
(-0)
P 		87
C 222.5
(-0.1)
P 		248.1
(1.8)
P 		237.8
(1)
P 		247.1
(1.7)
P 		182.5
(-3)
P 		265.1
(3)
P 		83
avr 198.4
(-3) 		246.1
(1.4) 		218.4
(-1.1) 		263.2
(3) 		231.8
(0.1) 		222.9
(-0.7) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6008
Sequence Type Exemplar sequence
Representative Public ID B0361.3 NCBI
Target Description B0361.3 /REP_DB=WormBase Gene ID /WP=CE00752 /TR=SW:Q10947 /GB=AAK18864.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066202 NCBI Caenorhabditis elegans B0361.3 (B0361.3) mRNA, complete cds. 11/11 None
GENEFINDER00000011061 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7277526:7283757:1 11/11 None
SNAP00000011049 ENSEMBL cdna:SNAP chromosome:CEL140:III:7281386:7283757:1 11/11 None
B0361.3.1 ENSEMBL cdna:known chromosome:CEL140:III:7281337:7283856:1 gene:B0361.3 11/11 None
B0361.3.2 ENSEMBL cdna:known chromosome:CEL140:III:7281384:7283814:1 gene:B0361.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7277523-7283755(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0361.3
Entrez Gene 176029 Entrez gene
SwissProt Q7JPQ6 EMBL-EBI
WormBase CE34242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68961 Hypothetical protein B0361.3 [Caenorhabditis elegans] ref|NP_498603.2| B0361.3 [Caenorhabditis elegans] sp|Q7JPQ6|YMP3_CAEEL Hypothetical protein B0361.3 in chromosome III 0.0
blast C88504 protein B0361.3 [imported] - Caenorhabditis elegans 0.0
blast CAE64440 Hypothetical protein CBG09146 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 3.1E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011061 11 52-74,143-165,185-207,232-254,261-280,338-360,373-395,399-419,426-448,458-477,484-506
Sequence
Target Sequence 
>C. ELEGANS:187473_AT
atccgtgccagtcatcgatttgtgacagataagatgcctaaccacggaagtgagacttac
aaggaaagcgccgacatggcaaaatctgcacttccaactcctcaagattttgtggtcaca
gctacacagaatcttctacatcttctccgtttctgggaagaagcattggcaaacgagaat
acaaaagtcgcactgatagcgcatgttatggatattaataaagaatctctggaaactcct
gatgacgacgccatctttgcggcaattcttgataggattgcgagtcatgtggtcaaaaag
cttctgcaatctatcaacgatgtctggttgactgatggaaaaacagctacactttcgaag
ggactcgttaaagaattcctatgtgacgctgaatatcttcgtgatgcccttgttgatttg
cgagcgggaacccatgataatcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGTGCCAGTCATCGATTTGTGA 412 37 3190 Antisense
TGGCAAAATCTGCACTTCCAACTCC 525 545 3266 Antisense
GTCACAGCTACACAGAATCTTCTAC 363 465 3304 Antisense
CTACATCTTCTCCGTTTCTGGGAAG 484 225 3325 Antisense
AAACTCCTGATGACGACGCCATCTT 612 127 3422 Antisense
ACGCCATCTTTGCGGCAATTCTTGA 421 91 3437 Antisense
AAAAGCTTCTGCAATCTATCAACGA 224 131 3485 Antisense
ACAGCTACACTTTCGAAGGGACTCG 138 109 3532 Antisense
GACGCTGAATATCTTCGTGATGCCC 398 381 3574 Antisense
GTGATGCCCTTGTTGATTTGCGAGC 639 483 3590 Antisense
GAGCGGGAACCCATGATAATCTTGA 255 385 3611 Antisense
Sequence Source Affymetrix Proprietary Database