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[187472_at]

Description F37A4.2 /REP_DB=WormBase Gene ID /WP=CE00710 /TR=SW:P41880 /GB=AAA50630.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 10      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 476.2
(-3)
P 		509.6
(-2.4)
P 		536.1
(-2)
P 		829.2
(3)
P 		353
B 475.4
(-3)
P 		608.5
(-0.6)
P 		580.5
(-1.1)
P 		806.2
(3)
P 		331
C 617.8
(0.9)
P 		615.1
(0.8)
P 		529.7
(-3)
P 		665.5
(3)
P 		136
avr 523.1
(-3) 		577.7
(-1.7) 		548.8
(-2.4) 		767
(3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 649
1 2 3 4 5 6 range
A 425.2
(-3)
P 		503.2
(-1.9)
P 		790.8
(2.2)
P 		730.7
(1.4)
P 		770.4
(1.9)
P 		843.7
(3)
P 		419
B 478.5
(-3)
P 		625.1
(-1.4)
P 		809
(0.6)
P 		702.6
(-0.5)
P 		871.8
(1.3)
P 		1027.1
(3)
P 		549
C 426.3
(-3)
P 		672.7
(-0.7)
P 		581
(-1.6)
P 		788.9
(0.4)
P 		629.5
(-1.1)
P 		1074
(3)
P 		648
avr 443.3
(-3) 		600.3
(-1.3) 		726.9
(0.2) 		740.7
(0.3) 		757.2
(0.5) 		981.6
(3) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 173.4
(3)
P 		110.6
(-3)
P 		140.1
(-0.2)
P 		121.4
(-2)
P 		63
B 151.6
(-0.2)
P 		150.3
(-0.5)
P 		134.5
(-3)
P 		171.8
(3)
P 		37
C 204.5
(3)
P 		176.9
(1.2)
P 		184.6
(1.7)
P 		112.2
(-3)
P 		92
avr 176.5
(3) 		145.9
(-1.4) 		153.1
(-0.4) 		135.1
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 78.4
(-3)
P 		179
(0.9)
P 		172.2
(0.7)
P 		185.3
(1.2)
P 		232.5
(3)
P 		205.4
(1.9)
P 		154
B 166.5
(-3)
P 		208.1
(-1.8)
P 		196.4
(-2.2)
P 		186.1
(-2.5)
P 		354.2
(2.2)
P 		383
(3)
P 		217
C 158
(-2.7)
P 		205.3
(-1.4)
P 		147.9
(-3)
P 		158.7
(-2.7)
P 		203.7
(-1.4)
P 		359.5
(3)
P 		212
avr 134.3
(-3) 		197.5
(-0.9) 		172.2
(-1.7) 		176.7
(-1.6) 		263.5
(1.3) 		316
(3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7446
Sequence Type Exemplar sequence
Representative Public ID F37A4.2 NCBI
Target Description F37A4.2 /REP_DB=WormBase Gene ID /WP=CE00710 /TR=SW:P41880 /GB=AAA50630.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066073 NCBI Caenorhabditis elegans F37A4.2 (F37A4.2) mRNA, complete cds. 11/11 None
SNAP00000044173 ENSEMBL cdna:SNAP chromosome:CEL140:III:6720781:6723157:1 11/11 None
GENEFINDER00000044180 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6722489:6723157:1 11/11 None
F37A4.2 ENSEMBL cdna:known chromosome:CEL140:III:6722478:6723218:1 gene:F37A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6722487-6723156(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A4.2
Entrez Gene 175947 Entrez gene
SwissProt P41880 EMBL-EBI
WormBase CE00710 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.21189.1.S1_AT similar to PRKR interacting protein 1 (IL11 inducible) cfa
DROSOPHILA_2:1637429_AT dm
DROSGENOME1:154849_AT dm
HG-U133_PLUS_2:218378_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U133A:218378_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U133A_2:218378_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HU35KSUBC:RC_N69983_AT PRKR interacting protein 1 (IL11 inducible) hs
U133_X3P:G13375900_3P_A_AT PRKR interacting protein 1 (IL11 inducible) hs
U133_X3P:HS.58127.0.S1_3P_A_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U133_PLUS_2:222615_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U133B:222615_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U95B:53675_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U95C:62468_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U95D:74655_AT PRKR interacting protein 1 (IL11 inducible) hs
HU35KSUBD:RC_AA312551_AT PRKR interacting protein 1 (IL11 inducible) hs
U133_X3P:HS2.424660.1.S1_3P_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U133_PLUS_2:1564165_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U133_PLUS_2:1564166_S_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U95B:43341_AT PRKR interacting protein 1 (IL11 inducible) hs
HG-U95C:53963_AT PRKR interacting protein 1 (IL11 inducible) hs
HU35KSUBA:W26566_AT PRKR interacting protein 1 (IL11 inducible) hs
MOUSE430_2:1442598_AT Prkr interacting protein 1 (IL11 inducible) mm
MOE430B:1442598_AT Prkr interacting protein 1 (IL11 inducible) mm
MG-U74BV2:104941_AT Prkr interacting protein 1 (IL11 inducible) mm
MG-U74BV2:110772_AT Prkr interacting protein 1 (IL11 inducible) mm
MOE430A:1417425_AT Prkr interacting protein 1 (IL11 inducible) mm
MOUSE430A_2:1417425_AT Prkr interacting protein 1 (IL11 inducible) mm
MOUSE430_2:1417425_AT Prkr interacting protein 1 (IL11 inducible) mm
MOE430B:1442084_AT Prkr interacting protein 1 (IL11 inducible) mm
MOUSE430_2:1442084_AT Prkr interacting protein 1 (IL11 inducible) mm
MU19KSUBB:TC32618_AT Prkr interacting protein 1 (IL11 inducible), mRNA (cDNA clone MGC:41035 IMAGE:1494676) mm
MU19KSUBB:TC32618_G_AT Prkr interacting protein 1 (IL11 inducible), mRNA (cDNA clone MGC:41035 IMAGE:1494676) mm
RAE230B:1379304_AT similar to PRKR interacting protein 1 (IL11 inducible) rn
RAT230_2:1379304_AT similar to PRKR interacting protein 1 (IL11 inducible) rn
Protein Similarities
Method ID Description E-Value
blast AAA50630 Hypothetical protein F37A4.2 [Caenorhabditis elegans] ref|NP_498474.1| F37A4.2 [Caenorhabditis elegans] sp|P41880|YPT2_CAEEL Hypothetical protein F37A4.2 in chromosome III 7.0E-47
blast AAA50630 Hypothetical protein F37A4.2 [Caenorhabditis elegans] ref|NP_498474.1| F37A4.2 [Caenorhabditis elegans] sp|P41880|YPT2_CAEEL Hypothetical protein F37A4.2 in chromosome III 8.0E-47
blast CAE70115 Hypothetical protein CBG16567 [Caenorhabditis briggsae] 3.0E-43
blast CAE70115 Hypothetical protein CBG16567 [Caenorhabditis briggsae] 4.0E-43
blast NP_078929 PRKR interacting protein 1 (IL11 inducible) [Homo sapiens] emb|CAH92973.1| hypothetical protein [Pongo pygmaeus] dbj|BAB14742.1| unnamed protein product [Homo sapiens] 7.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR009548 EMBL-EBI Protein of unknown function DUF1168 5.2E-93
Pfam IPR009548 EMBL-EBI Protein of unknown function DUF1168 5.2E-93
Sequence
Target Sequence 
>C. ELEGANS:187472_AT
atgccacgagatgatccaatcacagaagaagagcgccgagcaaattccgcaaccgattta
attcggatgagactggcaagattgcaacaaaatattgacaagcccgctccaattccaatt
aaaaaggagacactgagagcgccaaaagaacctttggaattcgtgagaaatgtcgttggt
tcttcagctgctgccggaagtgctgaatttcatatttacagaaacaaccgacgaaaagaa
caaaatcgacttgactacattgatgcggtagcaaaaaaagaagaattggacgatgcctac
cgtcacaaagtagaaaaacttgaaaaggaagaagaatcaaaaaccgcgaagaagagagca
aagcgattaaggcaaaaagctgctgctaagaagagaaaattgacaaaaaagaataatgaa
tctgacgagagctcatcagatgattcggattcagactcaggatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCACGAGATGATCCAATCACAG 463 41 13 Antisense
AGAGCGCCGAGCAAATTCCGCAACC 524 69 42 Antisense
CAAAATATTGACAAGCCCGCTCCAA 556 189 100 Antisense
GCCCGCTCCAATTCCAATTAAAAAG 552 285 114 Antisense
GGAGACACTGAGAGCGCCAAAAGAA 591 517 138 Antisense
GAAATGTCGTTGGTTCTTCAGCTGC 519 361 179 Antisense
GTTCTTCAGCTGCTGCCGGAAGTGC 78 443 191 Antisense
GCTGCCGGAAGTGCTGAATTTCATA 693 287 202 Antisense
ATCGACTTGACTACATTGATGCGGT 216 35 257 Antisense
GAATTGGACGATGCCTACCGTCACA 363 321 295 Antisense
GATTCGGATTCAGACTCAGGATCAG 19 433 454 Antisense
Sequence Source Affymetrix Proprietary Database